HHsearch alignment for GI: 254780724 and conserved domain: pfam00437
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=100.00 E-value=0 Score=499.29 Aligned_cols=271 Identities=39% Similarity=0.589 Sum_probs=255.2
Q ss_pred HHHCCCCCHHHHCCCCCCEEEEECCCCEEEE-ECCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC-CC
Q ss_conf 8856563358858833217998569918998-278389717620798999999999999809812433877879823-76
Q gi|254780724|r 120 DILGYGPLQPLIARDDIADIMVNGSNKVFIE-VNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLL-DG 197 (483)
Q Consensus 120 e~~glGpL~~ll~D~~VsdI~ing~~~I~ve-~~G~~~~~~~~f~~~~~l~~~i~rla~~~g~~i~~~~P~~d~~lp-dg 197 (483)
T Consensus 8 ~l~~lgpl~~ll~D~~vsDI~In~~~~v~V~~r~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~d~~l~~~g 87 (283)
T pfam00437 8 RLINLIPLEALLDDPGASDIHVNPPGRVWVRFRVGGIVLREIPDPSPAAAMRLISRIAVMAGLDISERRPPQDARLPLGG 87 (283)
T ss_pred HHHCHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCCEEEEECCCC
T ss_conf 99676257898528998799995799189999779789982577999999999999999829933332785257725688
Q ss_pred CEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC-
Q ss_conf 2034531553578816888405765466788865069988999998986225884899818888888999999830387-
Q gi|254780724|r 198 SRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDK- 276 (483)
Q Consensus 198 ~Ri~~~~~p~s~~G~~i~IRk~~~~~~~l~~l~~~g~~~~~~~~~l~~~v~~~~nilVsG~TGSGKTT~L~al~~~i~~- 276 (483)
T Consensus 88 ~R~~i~~~p~-~~g~si~IRk~~~~~~tl~~L~~~g~~~~~~~~~L~~~v~~~~~ilIsG~TGSGKTT~l~all~~i~~~ 166 (283)
T pfam00437 88 ERFRVSTPPV-VAGEAFVIRKPSSRSLTLDDLGMTGAFDADIAEFLRQAVQARGNILVSGGTGSGKTTLLYALLNEINTD 166 (283)
T ss_pred EEEEEEECCC-CCCCEEEEECCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 3799998752-367458985066778999997389778599999999999819759998899998899999999840877
Q ss_pred CCCEEEEECCHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEHH
Q ss_conf 67679996421312567875677874166665300018999987520599889965758799999999987397010200
Q gi|254780724|r 277 DERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGT 356 (483)
Q Consensus 277 ~~rivtIED~~El~l~~~~~v~~~~~~~~~e~~~~~t~~~ll~~aLR~~PD~IiVGEiRg~Ea~~~l~A~~TGH~G~ltT 356 (483)
T Consensus 167 ~~riitiED~~El~l~~~~~v~l~~~------~~~~t~~~ll~~~LR~~PD~IivGEiR~~Ea~~~l~a~~TGH~g~ltT 240 (283)
T pfam00437 167 DERIVTIEDPVEIQLEGPNQVQLNTR------LAGVTFADLLRAALRQRPDRIMVGEIRDGETADILRAANTGHPGSLST 240 (283)
T ss_pred CCCEEEECCCCEECCCCCCEEEEEEC------CCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 76278733785231798878999855------887699999999638899989757869989999999997599840785
Q ss_pred HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEEE
Q ss_conf 047888889999997553046799989999999742358899987
Q gi|254780724|r 357 IHANNARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQR 401 (483)
Q Consensus 357 lHa~s~~~ai~RL~~m~~~~~~~~~~~~~~~~ia~avd~iV~~~r 401 (483)
T Consensus 241 iHA~sa~~ai~RL~~l----g~~~~~~~i~~~l~~~~~v~qrl~r 281 (283)
T pfam00437 241 LHANSAAGALTRLEQL----GMELEPFEIRSSILAVVDIVQRLVR 281 (283)
T ss_pred ECCCCHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHEEEEEEC
T ss_conf 7149989999999985----6436999999999868759998333