HHsearch alignment for GI: 254780724 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.

Probab=97.00  E-value=0.00044  Score=47.16  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHH-CCCCCCEEEE-ECCHHH----CCC---CCCEEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             84899818888888999999830-3876767999-642131----256---78756778741666653000189999875
Q gi|254780724|r  251 CNVLISGGTGSGKTTLLNCLTRY-IDKDERIVTC-EDTAEL----QLQ---QPHVVRLETRPPNIEGEGEITMRDLVKNC  321 (483)
Q Consensus       251 ~nilVsG~TGSGKTT~L~al~~~-i~~~~rivtI-ED~~El----~l~---~~~~v~~~~~~~~~e~~~~~t~~~ll~~a  321 (483)
T Consensus         2 ~vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~--~~~d~~~~~~~~l~~~   79 (196)
T pfam00448         2 NVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSG--TGSDPAAVAFDAVEKA   79 (196)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECC--CCCCHHHHHHHHHHHH
T ss_conf             69999899999889999999999997799289997587768899999999986398178148--7778789999999998


Q ss_pred             HHCCCCEEEECCC
Q ss_conf             2059988996575
Q gi|254780724|r  322 LRMRPERIILGEV  334 (483)
Q Consensus       322 LR~~PD~IiVGEi  334 (483)
T Consensus        80 ~~~~~D~IlIDTa   92 (196)
T pfam00448        80 KAENYDVVLVDTA   92 (196)
T ss_pred             HHCCCCEEEEECC
T ss_conf             8468999999899