HHsearch alignment for GI: 254780724 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.61  E-value=0.00018  Score=49.84  Aligned_cols=96  Identities=28%  Similarity=0.383  Sum_probs=59.1

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE--ECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             258848998188888889999998303876767999642131256787567787--416666530001899998752059
Q gi|254780724|r  248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET--RPPNIEGEGEITMRDLVKNCLRMR  325 (483)
Q Consensus       248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~--~~~~~e~~~~~t~~~ll~~aLR~~  325 (483)
T Consensus         1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~--~v~~l~g~~~gyv-g~---~~~G~l~~~v~~~   74 (168)
T pfam07724         1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEH--SVSRLIGAPPGYV-GY---EEGGQLTEAVRRK   74 (168)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH--HHHHHCCCCCCCC-CC---CCCCCHHHHHHHC
T ss_conf             9837999889899899999999999967985344885575654256--9998705899872-62---4265078999838


Q ss_pred             CC-EEEECCCC--CHHHHH-HHHHHHCC
Q ss_conf             98-89965758--799999-99998739
Q gi|254780724|r  326 PE-RIILGEVR--GPEVLD-LLQAMNTG  349 (483)
Q Consensus       326 PD-~IiVGEiR--g~Ea~~-~l~A~~TG  349 (483)
T Consensus        75 p~~VillDEIeKa~~~V~~~LL~ild~g  102 (168)
T pfam07724        75 PYSIVLIDEIEKAHPGVQNDLLQILEGG  102 (168)
T ss_pred             CCCEEEEHHHHHHCHHHHHHHHHHCCCC
T ss_conf             9848986577665899999999870587