HHsearch alignment for GI: 254780724 and conserved domain: pfam07724
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=97.61 E-value=0.00018 Score=49.84 Aligned_cols=96 Identities=28% Similarity=0.383 Sum_probs=59.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHCCCCCCEEEEEE--ECCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 258848998188888889999998303876767999642131256787567787--416666530001899998752059
Q gi|254780724|r 248 RIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLET--RPPNIEGEGEITMRDLVKNCLRMR 325 (483)
Q Consensus 248 ~~~~nilVsG~TGSGKTT~L~al~~~i~~~~rivtIED~~El~l~~~~~v~~~~--~~~~~e~~~~~t~~~ll~~aLR~~ 325 (483)
T Consensus 1 ~p~~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~--~v~~l~g~~~gyv-g~---~~~G~l~~~v~~~ 74 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEH--SVSRLIGAPPGYV-GY---EEGGQLTEAVRRK 74 (168)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH--HHHHHCCCCCCCC-CC---CCCCCHHHHHHHC
T ss_conf 9837999889899899999999999967985344885575654256--9998705899872-62---4265078999838
Q ss_pred CC-EEEECCCC--CHHHHH-HHHHHHCC
Q ss_conf 98-89965758--799999-99998739
Q gi|254780724|r 326 PE-RIILGEVR--GPEVLD-LLQAMNTG 349 (483)
Q Consensus 326 PD-~IiVGEiR--g~Ea~~-~l~A~~TG 349 (483)
T Consensus 75 p~~VillDEIeKa~~~V~~~LL~ild~g 102 (168)
T pfam07724 75 PYSIVLIDEIEKAHPGVQNDLLQILEGG 102 (168)
T ss_pred CCCEEEEHHHHHHCHHHHHHHHHHCCCC
T ss_conf 9848986577665899999999870587