HHsearch alignment for GI: 254780724 and conserved domain: smart00488
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.39 E-value=0.024 Score=35.01 Aligned_cols=38 Identities=24% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHC
Q ss_conf 8999998986225884899818888888-9999998303
Q gi|254780724|r 237 AEGARLLQIIGRIRCNVLISGGTGSGKT-TLLNCLTRYI 274 (483)
Q Consensus 237 ~~~~~~l~~~v~~~~nilVsG~TGSGKT-T~L~al~~~i 274 (483)
T Consensus 14 ~e~m~~v~~~l~~~~~~llEaPTGtGKTlalL~~al~~~ 52 (289)
T smart00488 14 YEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWL 52 (289)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999999999997499799989996518999999999999