HHsearch alignment for GI: 254780724 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.41 E-value=0.026 Score=34.76 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=34.2
Q ss_pred HHHHHHHHHC----CCCCEEEECCCCCCHHHHHHHHHHHCC-----CCCCEEEEEC
Q ss_conf 9999898622----588489981888888899999983038-----7676799964
Q gi|254780724|r 239 GARLLQIIGR----IRCNVLISGGTGSGKTTLLNCLTRYID-----KDERIVTCED 285 (483)
Q Consensus 239 ~~~~l~~~v~----~~~nilVsG~TGSGKTT~L~al~~~i~-----~~~rivtIED 285 (483)
T Consensus 63 ~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~w 118 (361)
T smart00763 63 FVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 99999999844671256999988998877999999999999862677685599983