RPSBLAST alignment for GI: 254780724 and conserved domain: COG4962

>gnl|CDD|34569 COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]. Length = 355

 Score =  455 bits (1171), Expect = e-128
 Identities = 207/360 (57%), Positives = 254/360 (70%), Gaps = 5/360 (1%)

Query: 78  LSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCNDILGYGPLQPLIARDDIA 137
           L   D +  +  +   + E V    I +S  E   L  D+ +++ GYGPL+PL+A DDI 
Sbjct: 1   LEILDLERGKRSLKDEVREYVRENNIAISEAELDSLARDIQDELTGYGPLEPLLADDDIE 60

Query: 138 DIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVGRRVDESSPICDARLLDG 197
           DIMVNG  +VF+E  G    T I F D   LL + QRI   VGRR+DES PI DARL DG
Sbjct: 61  DIMVNGPGRVFVERKGGLEPTDIRFLDEAALLRIIQRIAAAVGRRIDESQPIVDARLPDG 120

Query: 198 SRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISG 257
           SR+N   PP+A+DGPTL+IRKF K KLTL  L+ FG +    A+ L+    IRCN+LISG
Sbjct: 121 SRLNANSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISG 180

Query: 258 GTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGEITMRDL 317
           GTGSGKTTLLN L+ +ID DER++T EDTAELQL  PHVVRLETRPPN+EG GE+TMRDL
Sbjct: 181 GTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDL 240

Query: 318 VKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHANNARESFGRMEAMIAMGG 377
           VKN LRMRP+RII+GEVRG E LDLLQAMNTGHDG MGT+HAN+ RE+  R+E +IA GG
Sbjct: 241 VKNALRMRPDRIIVGEVRGVEALDLLQAMNTGHDGGMGTLHANSPREALTRLEQLIAEGG 300

Query: 378 FTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEGNVIITQDLLKYEVMGED 437
                Q +R  I S++DVIVQ  RL DG RRIT I E+ GMEG V +TQD+ +++  G+D
Sbjct: 301 ----VQTIRRQIASAVDVIVQIARLGDG-RRITEIAEVTGMEGGVYVTQDIFEFDPGGKD 355