BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780724|ref|YP_003065137.1| component of type IV pilus
[Candidatus Liberibacter asiaticus str. psy62]
(483 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE 60
MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE
Sbjct: 1 MFGRRDKKLMGSVKREDNNPLPQEVVVSSSNIQKQNLQSSSPSAEGEIGNFVNRTPHYYE 60
Query: 61 VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND 120
VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND
Sbjct: 61 VKSTIFTTLIEMIDITQLSQYDSQSARDEIATLMNEIVSVKKITMSLDEQLDLFEDLCND 120
Query: 121 ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG 180
ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG
Sbjct: 121 ILGYGPLQPLIARDDIADIMVNGSNKVFIEVNGKTVETGINFRDNEQLLSVCQRIVNQVG 180
Query: 181 RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA 240
RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA
Sbjct: 181 RRVDESSPICDARLLDGSRVNVIIPPLALDGPTLTIRKFKKDKLTLDHLVSFGAVTAEGA 240
Query: 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE 300
RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE
Sbjct: 241 RLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLE 300
Query: 301 TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN 360
TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN
Sbjct: 301 TRPPNIEGEGEITMRDLVKNCLRMRPERIILGEVRGPEVLDLLQAMNTGHDGSMGTIHAN 360
Query: 361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG 420
NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG
Sbjct: 361 NARESFGRMEAMIAMGGFTLPSQMVREIITSSLDVIVQTQRLRDGSRRITNICEIVGMEG 420
Query: 421 NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS 480
NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS
Sbjct: 421 NVIITQDLLKYEVMGEDETGKLIGQHISTGVSRPRFWNRAAQYGEEKNLAEVLQSLEKQS 480
Query: 481 RAL 483
RAL
Sbjct: 481 RAL 483
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 30.0 bits (66), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 252 NVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPPNIEGEGE 311
+ + G TG GKT L+ L R + DE + D +E +++ V RL PP G E
Sbjct: 600 SFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEY-MEKHSVSRLIGSPPGYVGYEE 658
Query: 312 ITMRDLVKNCLRMRPERIIL 331
+ +R P +++L
Sbjct: 659 ---GGALTEAVRRHPYQVVL 675
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 253 VLISGGTGSGKTTLLNCLTRYIDKDE 278
V+I+G +GSGK+TL+ C+ +I+K +
Sbjct: 46 VIIAGPSGSGKSTLIRCIN-HIEKHQ 70
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 250 RCNVLISGGTGSGKTTLLNCLTRYID 275
+ N+L+ G TG GKT L L R ID
Sbjct: 113 KSNILLVGPTGCGKTYLAQTLARIID 138
>gi|254780805|ref|YP_003065218.1| chromosome partitioning protein B [Candidatus Liberibacter
asiaticus str. psy62]
Length = 300
Score = 28.5 bits (62), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 FEDLCNDILGYGPLQPLIAR 133
EDLC I +G +QPLI R
Sbjct: 63 LEDLCQSIKSHGIIQPLIVR 82
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 28.1 bits (61), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 257 GGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPH-------VVRLETR 302
G +G GK+T L CL R +E I C T E+ L + VVRL R
Sbjct: 39 GPSGCGKSTFLRCLNRM---NETIDNCVFTGEIILDGKNIYQSSVDVVRLRAR 88
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 253 VLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHV 296
+ I G GSGK+TL+N L +Y ++ ++ E + +Q + P
Sbjct: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEA 546
Score = 23.9 bits (50), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 16/134 (11%)
Query: 201 NVIIPPLALDGPTLTIRKF----KKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNV--- 253
NV I L LD T +I F K+D L ++ R R NV
Sbjct: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
Query: 254 ---------LISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAELQLQQPHVVRLETRPP 304
L +G S + LL+ +R++ + + I+ E +++ + + T P
Sbjct: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
Query: 305 NIEGEGEITMRDLV 318
+EGE DLV
Sbjct: 460 FVEGEPSQEFLDLV 473
>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 315 RDLVKNCLRMRPERIILGEV--RGPEVLDLLQAMNTGHDGSMGTIHANNARE 364
+D V + L++ PE I G V +GP + +L M+ G SMG + A+N E
Sbjct: 408 QDGVTDVLKLVPEGI-EGRVPYKGP-IASVLHQMSGGLKSSMGYVGASNIEE 457
>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
psy62]
Length = 554
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 254 LISGGTGSGKTTLLNCL 270
++SG TGSGK+ LL+ L
Sbjct: 25 ILSGDTGSGKSILLDAL 41
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 25.8 bits (55), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 255 ISGGTGSGKTTLLNCLTRYIDKDERIVT 282
I G G+GKTTLL LT I D +T
Sbjct: 315 IVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 217 RKFKKDKLTLDHLVSFGAVTAEGARLLQIIGRIRCNVLISGGTGSGKTTLLNCL 270
R F+K++ D ++ G + EG ++ + R+ ++LI+G TGSGK+ +N +
Sbjct: 425 RVFEKNQC--DLAINLGK-SIEGKPIIADLARMP-HLLIAGTTGSGKSVAINTM 474
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 257 GGTGSGKTTLLNCLTRYID 275
G +GSGK+T++N L R D
Sbjct: 386 GPSGSGKSTIINLLMRMYD 404
>gi|254780386|ref|YP_003064799.1| Type I secretion membrane fusion protein, HlyD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 54 RTPHYYEVKSTIFTTLIEMID 74
R PHY +++ F +IE ID
Sbjct: 351 RFPHYADIREKKFKAIIEKID 371
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 252 NVLISGGTGSGKTTLLNCL 270
++L++G TGSGK+ +N +
Sbjct: 414 HILVAGTTGSGKSVAINTM 432
>gi|254781208|ref|YP_003065621.1| hypothetical protein CLIBASIA_05575 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 578
Score = 25.0 bits (53), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 139 IMVNGSNKVFIEVNGKTVETGINFRDNEQL 168
++V S K + GKT +T F+DN+ L
Sbjct: 92 VVVRSSTKWSPALFGKTYKTPYTFKDNKSL 121
>537021.9.peg.472_1
Length = 369
Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 247 GRIRCNVLISGGTGSGKTTLLNCLTR 272
GRI + ++SG G GKTT + R
Sbjct: 18 GRIAQSYMLSGTRGIGKTTTARIIAR 43
>gi|254780824|ref|YP_003065237.1| hypothetical protein CLIBASIA_03585 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 162
Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 240 ARLLQIIGRIRCNVLISGGTGSGKTTLLNCLTRYIDKDERIVTCEDTAEL 289
R L I R+ + +SG GSGK+ L + R++ D+ + T L
Sbjct: 23 GRHLASILRLGDCLTLSGDLGSGKSFLARSIIRFLMHDDALEVLSPTFTL 72
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,285
Number of Sequences: 1233
Number of extensions: 12050
Number of successful extensions: 78
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 25
length of query: 483
length of database: 328,796
effective HSP length: 77
effective length of query: 406
effective length of database: 233,855
effective search space: 94945130
effective search space used: 94945130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)