HHsearch alignment for GI: 254780725 and conserved domain: CHL00072
>CHL00072 chlL photochlorophyllide reductase subunit L.
Probab=99.98 E-value=2.9e-30 Score=205.23 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=188.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHCCC
Q ss_conf 7999746988775689999999999626994999978798986033438998789888631845-612433765320248
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLPVFYA 241 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~~~ 241 (427)
T Consensus 2 ~iaiyG-KGGIGKSTtsaNlsaaLA~-~GkkVl~IGcDpk~DsT~~-L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~ 78 (271)
T CHL00072 2 KIAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFT-LTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGY 78 (271)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHH-HCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 699978-9854485889999999998-7997999789973777740-069988859999975378732164999985277
Q ss_pred CCEEEEECCCC-CC--CHHCCCHHHHHHHHHHHH--HCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 98068724876-12--032079999999899985--128889973888889-8999998620125435787768899999
Q gi|254780725|r 242 ENLSILTAPAM-LS--RTYDFDEKMIVPVLDILE--QIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNSK 315 (427)
Q Consensus 242 ~gL~lL~a~~~-~~--~~~~~~~~~l~~ll~~l~--~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a~ 315 (427)
T Consensus 79 ~gi~cvEaGGPepGvGCaGrgi~~~i-~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~Pi~~Ad~~~iVts~e~malyaAN 157 (271)
T CHL00072 79 GGVDCVEAGGPPAGAGCGGYVVGETV-KLLKELNAFYEYDVILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDALFAAN 157 (271)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHH-HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 88466543899988777886519999-99997376213888999447765565456750008889999567088999999
Q ss_pred HHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHH----
Q ss_conf 9999999819--8767538999565898752005999999848953799068799999988479618988899989----
Q gi|254780725|r 316 NLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAI---- 389 (427)
Q Consensus 316 ~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~---- 389 (427)
T Consensus 158 nI~~~i~~~a~~~~~rl~GiI~N~~~---~~~-~v~~fa~~~g~~~i~~iPrd~-~V~~ae~~~~TviE~~p~s~~~~~~ 232 (271)
T CHL00072 158 RIAASVREKARTHPLRLAGLVGNRTS---KRD-LIDKYVEACPMPVLEVLPLIE-DIRVSRVKGKTLFEMAESEPSLNYV 232 (271)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCC---CHH-HHHHHHHHCCCCEEEECCCCC-HHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf 99999999730468644436522688---378-999999973996698568711-6689997488204228998247899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999985221223211105899998742
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
T Consensus 233 ~~~Yr~LA~~I~~n~~~~iP~pl~~~el~~ll~ 265 (271)
T CHL00072 233 CDFYLNIADQLLSQPEGVVPKELPDRELFSLLS 265 (271)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999997399986688788799999999