HHsearch alignment for GI: 254780725 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=97.45 E-value=0.0046 Score=38.01 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 34567537999746988775689999999999626994999978798986033438998789888631845612433765
Q gi|254780725|r 156 GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 156 ~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
T Consensus 55 GGl~~g~ItEiyG-~~gsGKT~lal~~~~~a-q~~g~~a~fIDtE~~l~--------------------p~r~-----~~ 107 (279)
T COG0468 55 GGLPRGRITEIYG-PESSGKTTLALQLVANA-QKPGGKAAFIDTEHALD--------------------PERA-----KQ 107 (279)
T ss_pred CCCCCCEEEEEEC-CCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCC--------------------HHHH-----HH
T ss_conf 8865535899846-88765466899998886-53798089995899989--------------------9999-----99
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHH-HHHHH
Q ss_conf 32024898068724876120320799999998999851288899738888898999998620125435787768-89999
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLA-GLRNS 314 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~-slr~a 314 (427)
T Consensus 108 l~~~~~d~l~v~~~~-~~e~----q~~i~~~~~~~~~~~i~LvVVDSvaa~~r---~~~~~-d-------~~~~~~~r~l 171 (279)
T COG0468 108 LGVDLLDNLLVSQPD-TGEQ----QLEIAEKLARSGAEKIDLLVVDSVAALVR---AEEIE-D-------GHLGLRARLL 171 (279)
T ss_pred HHHHHHCCEEEECCC-CHHH----HHHHHHHHHHHCCCCCCEEEEECCCCCCH---HHHCC-C-------CHHHHHHHHH
T ss_conf 887542153686689-7799----99999999875468878899825743463---65548-5-------3489999999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 99999999819876753899956589
Q gi|254780725|r 315 KNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 315 ~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
T Consensus 172 s~~l~~L~~~a~~~~~~vi~~NQv~~ 197 (279)
T COG0468 172 SKALRKLTRLANKYNTAVIFTNQVRA 197 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCEEE
T ss_conf 99999999999974958999784034