HHsearch alignment for GI: 254780725 and conserved domain: COG0541
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion].
Probab=98.40 E-value=6e-05 Score=49.58 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=102.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
T Consensus 100 P~vImmvG-LQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~---------------------eQ--L~~La~q- 153 (451)
T COG0541 100 PTVILMVG-LQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAI---------------------EQ--LKQLAEQ- 153 (451)
T ss_pred CEEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH---------------------HH--HHHHHHH-
T ss_conf 85899981-5679748689999999997-499458985056786899---------------------99--9999986-
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHH--H------HHHHHHCCCCCCCCCCCHHHH
Q ss_conf 89806872487612032079999999899985-12888997388888989--9------999862012543578776889
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSW--T------QEVLTLSDKVVITTSLDLAGL 311 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~--~------~~~L~~AD~vviV~~p~~~sl 311 (427)
T Consensus 154 -~~v~~f~~~~~-~~Pv~----Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-- 225 (451)
T COG0541 154 -VGVPFFGSGTE-KDPVE----IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-- 225 (451)
T ss_pred -CCCCEECCCCC-CCHHH----HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--
T ss_conf -09853167788-99799----99999999997499889996887330309999999999855398748998764445--
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 99999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 312 RNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 312 r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
T Consensus 226 QdA~~~A~aF~e~---l~itGvIlTKlDGdaRGGaAL-S~~~~tg~PIkFiGtGEki~dLE~F~P~R~a 290 (451)
T COG0541 226 QDAVNTAKAFNEA---LGITGVILTKLDGDARGGAAL-SARAITGKPIKFIGTGEKIDDLEPFHPDRFA 290 (451)
T ss_pred HHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHH-HHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 6789999998662---698649997146787622888-5699878985997458873547774958899