HHsearch alignment for GI: 254780725 and conserved domain: COG1348
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism].
Probab=99.95 E-value=4.1e-26 Score=179.72 Aligned_cols=259 Identities=15% Similarity=0.216 Sum_probs=197.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 2 r~iAiYG-KGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 2 RQIAIYG-KGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CEEEEEC-CCCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCC
T ss_conf 3799962-7876731267789999997-2981799747987632777747866656999998618644588778212067
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHH------HHHCCCEEEECCCCC-CCHHHHHHHH--HCCCCCCCCCCCHHHHH
Q ss_conf 98068724876120320799999998999------851288899738888-8989999986--20125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDI------LEQIFPLVILDVPHV-WNSWTQEVLT--LSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~------l~~~yd~VIiD~p~~-~~~~~~~~L~--~AD~vviV~~p~~~slr 312 (427)
T Consensus 80 ~gv~CVEsGGPepG-vGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~MalY 158 (278)
T COG1348 80 GGVKCVESGGPEPG-VGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALY 158 (278)
T ss_pred CCEEEEECCCCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCEEEEHHCCCCCEEEEEECCCHHHHH
T ss_conf 85377425998999-88465119999999998187301287899953577347460002002666379999568358999
Q ss_pred HHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999999819--87675389995658987520059999998489537990687999999884796189888999899
Q gi|254780725|r 313 NSKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 313 ~a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
T Consensus 159 AANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~-e~v~~fa~~igt~li~~vPr~~-ivq~aE~~~kTvie~~P~s~~a 236 (278)
T COG1348 159 AANNIAKGIRKYAKTGGVRLGGIICNSRSVDRER-ELVEAFAERLGTQLIHFVPRDN-IVQKAELNGKTVIEYAPDSNQA 236 (278)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHCCCEEEECCCHH-HHHHHHHCCCCHHHHCCCHHHH
T ss_conf 9889999999987337963145774577764379-9999999984885276335127-8899987486611318462489
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999985221223211105899998742340
Q gi|254780725|r 391 NLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNMKC 425 (427)
Q Consensus 391 ~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~rk~ 425 (427)
T Consensus 237 ~~yr~LA~~I~~n~~~vip~pl~~eele~~~~~~~ 271 (278)
T COG1348 237 EEYRELAKKILENEKGVVPTPLSDEELEELLLEFG 271 (278)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999998377875678878789999999835