HHsearch alignment for GI: 254780725 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.11 E-value=1.6e-09 Score=77.69 Aligned_cols=116 Identities=15% Similarity=0.241 Sum_probs=92.6
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99983898999999988641100202237306998999999861899849999805987677889998885328998089
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI 110 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi 110 (427)
T Consensus 7 V~vVDDD~~vr~al~~L-----l~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~-~~~~PVI 80 (202)
T COG4566 7 VHVVDDDESVRDALAFL-----LESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER-GIRLPVI 80 (202)
T ss_pred EEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEE
T ss_conf 89976848899999999-----98389536650479999830667889769985578888508999999953-9998879
Q ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 981687189999999765626431899989999976310233
Q gi|254780725|r 111 VIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 111 vig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 982788728999999742156774788548999999999998