HHsearch alignment for GI: 254780725 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.11  E-value=1.6e-09  Score=77.69  Aligned_cols=116  Identities=15%  Similarity=0.241  Sum_probs=92.6

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             99983898999999988641100202237306998999999861899849999805987677889998885328998089
Q gi|254780725|r   31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI  110 (427)
Q Consensus        31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi  110 (427)
T Consensus         7 V~vVDDD~~vr~al~~L-----l~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~-~~~~PVI   80 (202)
T COG4566           7 VHVVDDDESVRDALAFL-----LESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER-GIRLPVI   80 (202)
T ss_pred             EEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEE
T ss_conf             89976848899999999-----98389536650479999830667889769985578888508999999953-9998879


Q ss_pred             EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             981687189999999765626431899989999976310233
Q gi|254780725|r  111 VIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       111 vig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~  122 (202)
T COG4566          81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR  122 (202)
T ss_pred             EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             982788728999999742156774788548999999999998