HHsearch alignment for GI: 254780725 and conserved domain: COG4753

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].

Probab=99.40  E-value=9.1e-12  Score=91.52  Aligned_cols=103  Identities=17%  Similarity=0.329  Sum_probs=90.1

Q ss_pred             HHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf             11002022373069989999998618998499998059876778899988853289980899816871899999997656
Q gi|254780725|r   50 DPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHV  129 (427)
Q Consensus        50 drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv  129 (427)
T Consensus        22 ~w~~~g~eiVgtA~NG~eAleli~e~~-pDiviTDI~MP~mdGLdLI~~ike~-~p~~~~IILSGy~eFeYak~Am~lGV   99 (475)
T COG4753          22 DWEALGIEVVGTAANGKEALELIQETQ-PDIVITDINMPGMDGLDLIKAIKEQ-SPDTEFIILSGYDEFEYAKKAMKLGV   99 (475)
T ss_pred             CHHHCCCEEEEECCCHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf             856369757875145799999987349-9789981578887579999999974-99853999846420589999986185


Q ss_pred             CEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf             2643189998999997631023322
Q gi|254780725|r  130 SEYLIEPLSVADIINSISAIFTPQE  154 (427)
Q Consensus       130 ~dyl~~P~~~~~l~~ai~~~~~~~~  154 (427)
T Consensus       100 ~dYLLKP~~k~eL~~~L~ki~~kl~  124 (475)
T COG4753         100 KDYLLKPVDKAELEEALKKIIGKLE  124 (475)
T ss_pred             HHHEECCCCHHHHHHHHHHHHHHHH
T ss_conf             2122076989999999999999999