HHsearch alignment for GI: 254780725 and conserved domain: COG4963
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=383.42 Aligned_cols=359 Identities=31% Similarity=0.472 Sum_probs=293.5
Q ss_pred HHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 64018730599983898999999988641100202237306998999999861899849999805987677889998885
Q gi|254780725|r 22 SMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAE 101 (427)
Q Consensus 22 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~ 101 (427)
T Consensus 5 ~~a~~~~~~~~~i~~~s~~~v~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~~d~~~~~~---- 78 (366)
T COG4963 5 MMEMGVLFLAILITPASNHGVNIANG--MQLILNLDLINKKDADFLSLVHSIFVDEGAEPLGSETARLADIKNIKE---- 78 (366)
T ss_pred HHCCCCEEECEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH----
T ss_conf 10245332021688725666204220--477765432113672022123314578775431332011135555566----
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf 32899808998168718999999976562643189998999997631023322234567537999746988775689999
Q gi|254780725|r 102 VCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHN 181 (427)
Q Consensus 102 ~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~n 181 (427)
T Consensus 79 -------------------~~~~~~a~~~~~v~~~~---------------~s~s~~~~~r~iafl~akgg~g~stlA~n 124 (366)
T COG4963 79 -------------------NLAAIRAGVNDCVDIES---------------DSISIAQQGRELAFLGAKGGVGTSTLAHN 124 (366)
T ss_pred -------------------HHHHHHHHHHHEEECCC---------------CCCHHHHHCEEEEEEEECCCCCHHHHHHH
T ss_conf -------------------77887642101000245---------------65012110328999960588666899999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCH
Q ss_conf 99999962699499997879898603343899878988863184561243376532024898068724876120320799
Q gi|254780725|r 182 CAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDE 261 (427)
Q Consensus 182 LA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~ 261 (427)
T Consensus 125 ~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~~~~l~ll~a~~~~~~~~d~~~ 204 (366)
T COG4963 125 LAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLASGLKLLAAPTELAKNYDLKT 204 (366)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHCCCCC
T ss_conf 99998641487389997688876123430787214589886097876078777898616887633037744565215331
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 99999899985128889973888889899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 262 KMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 262 ~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
T Consensus 205 ~~~~~Ll~~~~~~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 205 GAVERLLDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 26999999764028838971897662589999862884999963638989999999999997377988956886522788
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHH
Q ss_conf 752005999999848953799068799999988479618988899989999999999985221223211--105899998
Q gi|254780725|r 342 KKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQ--SAMYTKIKK 419 (427)
Q Consensus 342 ~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~gr~~~~~~k--~~~~~~l~~ 419 (427)
T Consensus 285 ~~~~--~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~~~~~~~~k~l~~la~~l~~~~~~~r~~~~~~l~~~l~k 362 (366)
T COG4963 285 KRPE--PSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEVDPGSPAAKALAQLAQSLGGRISGERRKKLRGLGKLLGK 362 (366)
T ss_pred CCCC--HHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999--99998884884001366770544444206960222377875889999999985376672101357889999877
Q ss_pred HHH
Q ss_conf 742
Q gi|254780725|r 420 IFN 422 (427)
Q Consensus 420 lf~ 422 (427)
T Consensus 363 ~~~ 365 (366)
T COG4963 363 LFR 365 (366)
T ss_pred HHC
T ss_conf 504