HHsearch alignment for GI: 254780725 and conserved domain: COG4988
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].
Probab=94.66 E-value=0.071 Score=30.68 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC------HHHCCCCC---CCCHHHHH--CCCCC
Q ss_conf 675379997469887756899999999996269949999787989860------33438998---78988863--18456
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA------NINFDKDP---INSISDAI--YPVGR 227 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~------~~~l~~~~---~~~l~d~l--~~~~r 227 (427)
T Consensus 345 ~~g~~talvG-~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 345 KAGQLTALVG-ASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCCC-CEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCC
T ss_conf 4896799988-999978999999847577778-44888993100068778886724627998405641887773168767
Q ss_pred --------HHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHH--HHHHHHCCCEEEECCCCC-CCHHH
Q ss_conf --------1243376532024898068724876120320799999998--999851288899738888-89899
Q gi|254780725|r 228 --------IDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPV--LDILEQIFPLVILDVPHV-WNSWT 290 (427)
Q Consensus 228 --------lD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~l--l~~l~~~yd~VIiD~p~~-~~~~~ 290 (427)
T Consensus 423 s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~----G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPK-PDGLDTVIGEG----GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred CHHHHHHHHHHHCHHHHHCC-CCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 89999999998257876167-77643302158----88778999999999998558888898548756798767