HHsearch alignment for GI: 254780725 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.24 E-value=0.00013 Score=47.56 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=98.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 98 ~Vim~vG-lqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQ-----------------------L~~la~~-- 150 (433)
T PRK00771 98 QTILLVG-LQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQ-----------------------LKQLCEK-- 150 (433)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHH-----------------------HHHHHHH--
T ss_conf 5899973-7889789999999999997-79946785067883689999-----------------------9999986--
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032079999999899985128889973888889899--------99986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr~ 313 (427)
T Consensus 151 ~~v~~~~~~~~~d-p~~i----~~~a~~~~k-~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~ 222 (433)
T PRK00771 151 INVPFYGDPKEKD-AVKI----VKEGLEKLK-KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQ 222 (433)
T ss_pred CCCCCCCCCCCCC-HHHH----HHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HH
T ss_conf 3887317889999-9999----999999845-69889997765210409999999999877579768998654422--67
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
T Consensus 223 a~~~a~~F~~~~---~i~gvIlTKlDgdarGGaaL-Si~~~t~~PI~FiG~GEk~~dle~F~p~r~a 285 (433)
T PRK00771 223 ASEQAKAFKEAV---GIGGIIITKLDGTAKGGGAL-SAVAETGAPIKFIGTGETIDDLEPFDPKRFI 285 (433)
T ss_pred HHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 899999998753---88737997256788730542-1898878995688617872148866808899