HHsearch alignment for GI: 254780725 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=98.24  E-value=0.00013  Score=47.56  Aligned_cols=171  Identities=16%  Similarity=0.143  Sum_probs=98.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r  162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA  241 (427)
Q Consensus       162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~  241 (427)
T Consensus        98 ~Vim~vG-lqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQ-----------------------L~~la~~--  150 (433)
T PRK00771         98 QTILLVG-LQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQ-----------------------LKQLCEK--  150 (433)
T ss_pred             EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHH-----------------------HHHHHHH--
T ss_conf             5899973-7889789999999999997-79946785067883689999-----------------------9999986--


Q ss_pred             CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf             9806872487612032079999999899985128889973888889899--------99986201254357877688999
Q gi|254780725|r  242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLRN  313 (427)
Q Consensus       242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr~  313 (427)
T Consensus       151 ~~v~~~~~~~~~d-p~~i----~~~a~~~~k-~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~  222 (433)
T PRK00771        151 INVPFYGDPKEKD-AVKI----VKEGLEKLK-KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQ  222 (433)
T ss_pred             CCCCCCCCCCCCC-HHHH----HHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HH
T ss_conf             3887317889999-9999----999999845-69889997765210409999999999877579768998654422--67


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf             999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r  314 SKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG  371 (427)
Q Consensus       314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~  371 (427)
T Consensus       223 a~~~a~~F~~~~---~i~gvIlTKlDgdarGGaaL-Si~~~t~~PI~FiG~GEk~~dle~F~p~r~a  285 (433)
T PRK00771        223 ASEQAKAFKEAV---GIGGIIITKLDGTAKGGGAL-SAVAETGAPIKFIGTGETIDDLEPFDPKRFI  285 (433)
T ss_pred             HHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             899999998753---88737997256788730542-1898878995688617872148866808899