HHsearch alignment for GI: 254780725 and conserved domain: PRK01889
>PRK01889 ribosome-associated GTPase; Reviewed.
Probab=94.16 E-value=0.42 Score=25.97 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=46.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH-CCCC-CEEEEEECCC---CHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 499998059876778899988853-2899-8089981687---18999999976---56264318999899999763102
Q gi|254780725|r 79 DLIIVQTKVDSREVLSALEPLAEV-CDSG-TKVIVIGDTN---DVSLYRALISN---HVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 79 ~~iivd~~~~~~~~~~~l~~la~~-~~p~-~~Vivig~~~---d~~l~r~l~r~---Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
T Consensus 113 D~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~d~~~~~~~~~~~~~g~~v~~vSa~~-~~gl~~L~~~l 191 (353)
T PRK01889 113 DTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCEDVEEKIAEVEALAPGVPVLAVNALD-GEGVDALQAWL 191 (353)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHH
T ss_conf 68999952899979789999999999869967999966556679999999999855997599997899-84789999986
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 3322234567537999746988775689999999
Q gi|254780725|r 151 TPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAF 184 (427)
Q Consensus 151 ~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~ 184 (427)
T Consensus 192 --------~~GkT~vl~G-~SGVGKSTLiN~L~g 216 (353)
T PRK01889 192 --------KPGKTVALLG-SSGVGKSTLVNALLG 216 (353)
T ss_pred --------HCCCEEEEEC-CCCCCHHHHHHHHCC
T ss_conf --------3497899977-888669999987565