HHsearch alignment for GI: 254780725 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=99.08 E-value=2.1e-08 Score=70.88 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=109.7
Q ss_pred HHHHHHHHHCCCCEEECC--------CCCHHHHHHHHHHC----CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 899999997656264318--------99989999976310----233222345675379997469887756899999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLIE--------PLSVADIINSISAI----FTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFS 185 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~--------P~~~~~l~~ai~~~----~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~ 185 (427)
T Consensus 155 ~~l~~~L~~~Gvs~~la~~l~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVG-PTGVGKTTTiAKLAA~ 233 (412)
T PRK05703 155 AKLYKRLKESGLSPEIADKLLKLLLEDMNPREAWRYLLELLANMLPTRVEDILEQGGVVALVG-PTGVGKTTTLAKLAAR 233 (412)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf 999999998699999999999986642897999999999999757888766545673699988-8887567699999999
Q ss_pred HHHHCCC-CEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHH
Q ss_conf 9962699-499997879898603343899878988863184561243376532024898068724876120320799999
Q gi|254780725|r 186 IASVFAM-ETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMI 264 (427)
Q Consensus 186 LA~~~~~-~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l 264 (427)
T Consensus 234 ~~l~~~~~kV~lIT~DtyRigA~eQ-----------------------Lk~Ya~i--lgvp~~v---------~~~~~~l 279 (412)
T PRK05703 234 YALEEGKDKVALITLDTYRIGAVEQ-----------------------LKTYAKI--MGIPVKV---------AYDPKEL 279 (412)
T ss_pred HHHHCCCCEEEEEEECCCCHHHHHH-----------------------HHHHHHH--CCCEEEE---------ECCHHHH
T ss_conf 9997299817999837677779999-----------------------9999997--1973798---------4799999
Q ss_pred HHHHHHHHHCCCEEEECCCCCC--CHHH----HHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9989998512888997388888--9899----999862--0125435787768899999999999981987675389995
Q gi|254780725|r 265 VPVLDILEQIFPLVILDVPHVW--NSWT----QEVLTL--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 265 ~~ll~~l~~~yd~VIiD~p~~~--~~~~----~~~L~~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
T Consensus 280 ~~al~~~~-~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat-~~~~dl~~i~~~f~~~~~~----~lI~T 353 (412)
T PRK05703 280 AKALEQLA-NCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSAT-TKYRDLKDIVKHFSRLPLD----GLILT 353 (412)
T ss_pred HHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHHCCCCCC----EEEEE
T ss_conf 99998715-899799968988978999999999998624887189997598-9989999999984679998----79997
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 6589875200599999984895379
Q gi|254780725|r 337 QVKTPKKPEISISDFCAPLGITPSA 361 (427)
Q Consensus 337 r~~~~~~~~i~~~~~~~~lg~~~~~ 361 (427)
T Consensus 354 KlDEt~~~G-~il~~~~~~~lplsy 377 (412)
T PRK05703 354 KLDETSSLG-SILSLLIESGLPISY 377 (412)
T ss_pred EECCCCCCC-HHHHHHHHHCCCEEE
T ss_conf 112899862-999999998879699