HHsearch alignment for GI: 254780725 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.36 E-value=2.7e-05 Score=51.72 Aligned_cols=169 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
T Consensus 73 ~~~~vI~lvG-~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQL-----------------------k~~a~ 127 (270)
T PRK06731 73 KEVQTIALIG-PTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQL-----------------------QDYVK 127 (270)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHH-----------------------HHHHH
T ss_conf 9981899988-8989889999999999986-799089998388888899999-----------------------99999
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH--CCCEEEECCCCCCC--HHH-HHH---HH--HCCCCCCCCCCCH
Q ss_conf 24898068724876120320799999998999851--28889973888889--899-999---86--2012543578776
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ--IFPLVILDVPHVWN--SWT-QEV---LT--LSDKVVITTSLDL 308 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~--~yd~VIiD~p~~~~--~~~-~~~---L~--~AD~vviV~~p~~ 308 (427)
T Consensus 128 ~--l~v~~~~~~---------~~~~~~~~~~~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~ 196 (270)
T PRK06731 128 T--IGFEVIAVR---------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred H--HCCCEECCC---------CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 8--199535458---------87899999999999769999999799987146999999999860638987999986877
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHHH
Q ss_conf 889999999999998198767538999565898752005999999848953799-----0687999
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGAV 369 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~~ 369 (427)
T Consensus 197 -~~~~~~~~~~~f~~~~----i~gvIlTKlD~ta~gG~-als~~~~~~~PI~fig~Ge~VpeDi~~ 256 (270)
T PRK06731 197 -KSKDMIEIITNFKDIH----IDGIVFTKFDETASSGE-LLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred -CHHHHHHHHHHHCCCC----CCEEEEECCCCCCCCCH-HHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf -7699999999807799----98899965358997729-999999988597999459997021413