HHsearch alignment for GI: 254780725 and conserved domain: PRK06731

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=98.36  E-value=2.7e-05  Score=51.72  Aligned_cols=169  Identities=14%  Similarity=0.138  Sum_probs=93.5

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r  159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV  238 (427)
Q Consensus       159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~  238 (427)
T Consensus        73 ~~~~vI~lvG-~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQL-----------------------k~~a~  127 (270)
T PRK06731         73 KEVQTIALIG-PTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQL-----------------------QDYVK  127 (270)
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHH-----------------------HHHHH
T ss_conf             9981899988-8989889999999999986-799089998388888899999-----------------------99999


Q ss_pred             CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH--CCCEEEECCCCCCC--HHH-HHH---HH--HCCCCCCCCCCCH
Q ss_conf             24898068724876120320799999998999851--28889973888889--899-999---86--2012543578776
Q gi|254780725|r  239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ--IFPLVILDVPHVWN--SWT-QEV---LT--LSDKVVITTSLDL  308 (427)
Q Consensus       239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~--~yd~VIiD~p~~~~--~~~-~~~---L~--~AD~vviV~~p~~  308 (427)
T Consensus       128 ~--l~v~~~~~~---------~~~~~~~~~~~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~  196 (270)
T PRK06731        128 T--IGFEVIAVR---------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM  196 (270)
T ss_pred             H--HCCCEECCC---------CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf             8--199535458---------87899999999999769999999799987146999999999860638987999986877


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHHH
Q ss_conf             889999999999998198767538999565898752005999999848953799-----0687999
Q gi|254780725|r  309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGAV  369 (427)
Q Consensus       309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~~  369 (427)
T Consensus       197 -~~~~~~~~~~~f~~~~----i~gvIlTKlD~ta~gG~-als~~~~~~~PI~fig~Ge~VpeDi~~  256 (270)
T PRK06731        197 -KSKDMIEIITNFKDIH----IDGIVFTKFDETASSGE-LLKIPAVSSAPIVLMTDGQDVKKNIHI  256 (270)
T ss_pred             -CHHHHHHHHHHHCCCC----CCEEEEECCCCCCCCCH-HHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf             -7699999999807799----98899965358997729-999999988597999459997021413