HHsearch alignment for GI: 254780725 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=95.74 E-value=0.15 Score=28.68 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
T Consensus 22 p~gs~~li~G-~~GtGKsi~~~~~~~~~l~-~g~~~~yis~e~t---------------~~~~i~qm~s~g~di~~-~~~ 83 (230)
T PRK08533 22 PFGSIILIEG-DESTGKSILSQRLAYGFLQ-NGYSVSYVSSQLT---------------TTEFIKQMMSLGYDINK-KLI 83 (230)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCC---------------HHHHHHHHHHCCCCCHH-HHH
T ss_conf 8984899986-8998789999999999987-8986999994389---------------99999999986998179-975
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCC
Q ss_conf 2489806872487612032079999999899985-12888997388
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVP 283 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p 283 (427)
T Consensus 84 --~G~l~~i~~~~~~~-~~~~~~~~L~~ll~~~~~~~~dvIIIDSl 126 (230)
T PRK08533 84 --SGKLLYIPVYPLLS-GNSEKRDFLDKLMNTRRFYEKDVVIIDSL 126 (230)
T ss_pred --CCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf --79679996134335-40457899999973266437989999053