HHsearch alignment for GI: 254780725 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=92.62  E-value=0.25  Score=27.36  Aligned_cols=112  Identities=11%  Similarity=0.115  Sum_probs=65.0

Q ss_pred             EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf             30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r   60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV  139 (427)
Q Consensus        60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~  139 (427)
T Consensus        15 LkL~~m~~~~~~~~~~a~~---------~~~s~~e~L~~Ll~~E--------~~~R~~rr~~r~lk~A~fp----~~ktl   73 (258)
T PRK09183         15 LQLESLISAAPALAQQAVD---------QEWSYMDFLEHLLHEE--------KLARHQRKQAMYTRMAAFP----AVKTF   73 (258)
T ss_pred             CCCHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC----CCCCH
T ss_conf             7831899999999998876---------3999999999999999--------9999999999999977999----98777


Q ss_pred             HHH------------HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             999------------9976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r  140 ADI------------INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD  200 (427)
Q Consensus       140 ~~l------------~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD  200 (427)
T Consensus        74 e~fDf~~~~~l~~~~i~~La~~------~fi~~~~Nvil~G-~~GtGKThLA~Alg~~A~~-~G~~v~f~~~~  138 (258)
T PRK09183         74 EEYDFTFATGAPQKQLQSLRSL------SFIERNENIVLLG-PSGVGKTHLAIALGYEAVR-AGIKVRFTTAA  138 (258)
T ss_pred             HHCCCCCCCCCCHHHHHHHHCC------CHHHCCCCEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_conf             5556546886238999988258------1665588679989-9998689999999999998-79939997899