HHsearch alignment for GI: 254780725 and conserved domain: PRK09183
>PRK09183 transposase/IS protein; Provisional.
Probab=92.62 E-value=0.25 Score=27.36 Aligned_cols=112 Identities=11% Similarity=0.115 Sum_probs=65.0
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
T Consensus 15 LkL~~m~~~~~~~~~~a~~---------~~~s~~e~L~~Ll~~E--------~~~R~~rr~~r~lk~A~fp----~~ktl 73 (258)
T PRK09183 15 LQLESLISAAPALAQQAVD---------QEWSYMDFLEHLLHEE--------KLARHQRKQAMYTRMAAFP----AVKTF 73 (258)
T ss_pred CCCHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC----CCCCH
T ss_conf 7831899999999998876---------3999999999999999--------9999999999999977999----98777
Q ss_pred HHH------------HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999------------9976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 140 ADI------------INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 140 ~~l------------~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
T Consensus 74 e~fDf~~~~~l~~~~i~~La~~------~fi~~~~Nvil~G-~~GtGKThLA~Alg~~A~~-~G~~v~f~~~~ 138 (258)
T PRK09183 74 EEYDFTFATGAPQKQLQSLRSL------SFIERNENIVLLG-PSGVGKTHLAIALGYEAVR-AGIKVRFTTAA 138 (258)
T ss_pred HHCCCCCCCCCCHHHHHHHHCC------CHHHCCCCEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_conf 5556546886238999988258------1665588679989-9998689999999999998-79939997899