HHsearch alignment for GI: 254780725 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.73  E-value=0.15  Score=28.65  Aligned_cols=97  Identities=16%  Similarity=0.131  Sum_probs=56.3

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf             6753799974698877568999999999962699499997879898603---3438998789888631845612433765
Q gi|254780725|r  159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN---INFDKDPINSISDAIYPVGRIDKAFVSR  235 (427)
Q Consensus       159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~---~~l~~~~~~~l~d~l~~~~rlD~~~l~~  235 (427)
T Consensus       264 ~~GsstLi~G-p~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~~~~l~~~a~~~G~d-------------------l~~  322 (501)
T PRK09302        264 FRGSIILVSG-ATGTGKTLLVSKFAEAACR-RGERCLLFAFEESRAQLVRNATSWGID-------------------LEE  322 (501)
T ss_pred             CCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHHHCCCC-------------------HHH
T ss_conf             5894699988-9998889999999999986-599089999967999999999973998-------------------488


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECC
Q ss_conf             32024898068724876120320799999998999851-288899738
Q gi|254780725|r  236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDV  282 (427)
Q Consensus       236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~  282 (427)
T Consensus       323 ~~~--~G~l~i~~~~p~~~~----~~e~~~~i~~~v~~~~~~rVvIDs  364 (501)
T PRK09302        323 MER--KGLLKIICARPESTG----LEDHLQIIKREIEEFKPSRVAVDP  364 (501)
T ss_pred             HHH--CCCEEEEEECCCCCC----HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf             874--894799983700059----899999999999972998999958