HHsearch alignment for GI: 254780725 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.73 E-value=0.15 Score=28.65 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 6753799974698877568999999999962699499997879898603---3438998789888631845612433765
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN---INFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~---~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
T Consensus 264 ~~GsstLi~G-p~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~~~~l~~~a~~~G~d-------------------l~~ 322 (501)
T PRK09302 264 FRGSIILVSG-ATGTGKTLLVSKFAEAACR-RGERCLLFAFEESRAQLVRNATSWGID-------------------LEE 322 (501)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHHHCCCC-------------------HHH
T ss_conf 5894699988-9998889999999999986-599089999967999999999973998-------------------488
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECC
Q ss_conf 32024898068724876120320799999998999851-288899738
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDV 282 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~ 282 (427)
T Consensus 323 ~~~--~G~l~i~~~~p~~~~----~~e~~~~i~~~v~~~~~~rVvIDs 364 (501)
T PRK09302 323 MER--KGLLKIICARPESTG----LEDHLQIIKREIEEFKPSRVAVDP 364 (501)
T ss_pred HHH--CCCEEEEEECCCCCC----HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 874--894799983700059----899999999999972998999958