HHsearch alignment for GI: 254780725 and conserved domain: PRK09468
>PRK09468 ompR osmolarity response regulator; Provisional.
Probab=99.35 E-value=5.3e-11 Score=86.81 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=95.4
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 59998389899999998864110020223730-69989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 7 kILiVEDd~~~~~~l~~~L-----~~~g~~v~~a~~~~~a~~~~~~~-~~DlvilDi~lp~~dG~~l~~~iR~~-~~~~p 79 (239)
T PRK09468 7 KILVVDDDMRLRALLERYL-----TEQGFQVRSAANAEQMDRLLTRE-SFHLMVLDLMLPGEDGLSICRRLRSQ-NNPTP 79 (239)
T ss_pred EEEEEECCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHH-CCCCC
T ss_conf 8999909999999999999-----98899999989999999999758-99899987899888873467778750-57877
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89981687189999999765626431899989999976310233
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 80 II~LTa~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR 123 (239)
T PRK09468 80 IIMLTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89994667878999999769868855899989999999999863