HHsearch alignment for GI: 254780725 and conserved domain: PRK09836
>PRK09836 DNA-binding transcriptional activator CusR; Provisional.
Probab=99.37 E-value=3.8e-11 Score=87.73 Aligned_cols=115 Identities=9% Similarity=0.189 Sum_probs=96.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
T Consensus 3 ILiVEDd~~l~~~l~~~-----L~~~G~~v~~a~~g~~a~~~~~~~-~~DlvilDi~lP~~~G~~l~~~iR~~-~~~~PI 75 (226)
T PRK09836 3 LLIVEDEKKTGEYLTKG-----LTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVNGWDIVRMLRSA-NKGMPI 75 (226)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHH-CCCCEE
T ss_conf 99993999999999999-----987899999989999999998518-99999988999999872043567761-679609
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 76 I~Lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9994458988999999769968863687679999999999662