HHsearch alignment for GI: 254780725 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=98.84  E-value=9.3e-08  Score=66.88  Aligned_cols=112  Identities=7%  Similarity=0.138  Sum_probs=84.9

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r   35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD  114 (427)
Q Consensus        35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~  114 (427)
T Consensus        16 ~~dp~l~~~~~a~~l~e~l---~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLTt   89 (216)
T PRK10100         16 ITKPSLQATALLQHLKQSL---AITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT   89 (216)
T ss_pred             ECCCHHHHHHHHHHHHHHH---HHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             5584299999999889876---47630247766776447---99989984887883089999999972599977999968


Q ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             87189999999765626431899989999976310233
Q gi|254780725|r  115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        90 ~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G  127 (216)
T PRK10100         90 PEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG  127 (216)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             87489999997658766766899999999999999879