HHsearch alignment for GI: 254780725 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=98.84 E-value=9.3e-08 Score=66.88 Aligned_cols=112 Identities=7% Similarity=0.138 Sum_probs=84.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD 114 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~ 114 (427)
T Consensus 16 ~~dp~l~~~~~a~~l~e~l---~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLTt 89 (216)
T PRK10100 16 ITKPSLQATALLQHLKQSL---AITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT 89 (216)
T ss_pred ECCCHHHHHHHHHHHHHHH---HHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 5584299999999889876---47630247766776447---99989984887883089999999972599977999968
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 87189999999765626431899989999976310233
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 90 ~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G 127 (216)
T PRK10100 90 PEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 87489999997658766766899999999999999879