HHsearch alignment for GI: 254780725 and conserved domain: PRK10360
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional.
Probab=99.00 E-value=2.5e-08 Score=70.40 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 98999999988641100202237306998999999861899849999805987677889998885328998089981687
Q gi|254780725|r 37 TDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTN 116 (427)
Q Consensus 37 ~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~ 116 (427)
T Consensus 10 h~l~r~gl~~~l~~--~~~~~vv~~~~~~~~~l~~~~~~-~~dvvllD~~mp~~~g~~~~~~l~----~~~~vivls~~~ 82 (196)
T PRK10360 10 HLIVRSGFAQLLGL--EPDLQVVAEFGSGREALAGLPGR-GVQVCICDISMPDISGLELLSQLP----KGMATIMLSVHD 82 (196)
T ss_pred CHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHH----CCCCEEEEEECC
T ss_conf 79999999999812--99959999989999999988744-999999878878862077999984----387489997307
Q ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 18999999976562643189998999997631023
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 83 ~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~ 117 (196)
T PRK10360 83 SPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 59999999975998899778999999999999986