HHsearch alignment for GI: 254780725 and conserved domain: PRK10529
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional.
Probab=99.19 E-value=4e-10 Score=81.42 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=93.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 999838989999999886411002022373-0699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
T Consensus 4 ILivEDd~~l~~~l~~~-----L~~~g~~V~~a~~~~~al~~~~~~-~~DlviLDi~lP~~dG~~l~~~iR~~--~~~pI 75 (225)
T PRK10529 4 VLIVEDEQAIRRFLRTA-----LEGDGMRVFEAETLQRGLLEAATR-KPDLIILDLGLPDGDGIEFIRDLRQW--SAIPV 75 (225)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEECC--CCCCE
T ss_conf 99997989999999999-----998899999979999999986117-99899980788888876331000127--99878
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 76 I~lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (225)
T PRK10529 76 IVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9995468989999999769876540785459999999999714