HHsearch alignment for GI: 254780725 and conserved domain: PRK10651
>PRK10651 transcriptional regulator NarL; Provisional.
Probab=99.20 E-value=4.5e-10 Score=81.10 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=97.2
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 7 irVlIvDDh~l~r~gl~~~L~~--~~~~~vv~~a~~~~ea~~~~~~~~-pDlvllDl~lp~~~G~~~~~~l~~~-~~~~~ 82 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISM--APDITVVGEASNGEQGIELAESLD-PDLILLDLNMPGMNGLETLDKLREK-SLSGR 82 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHH--CCCEEEEEEECCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 7899983999999999999975--899389999899999999987079-9999995999998887642323345-78874
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 83 iivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~ 125 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 125 (216)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 6763055418899999966987898378999999999999985