HHsearch alignment for GI: 254780725 and conserved domain: PRK10693
>PRK10693 response regulator of RpoS; Provisional.
Probab=99.46 E-value=6.4e-12 Score=92.46 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 18730599983898999999988641100202237-30699899999986189984999980598767788999888532
Q gi|254780725|r 25 SLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVC 103 (427)
Q Consensus 25 ~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~ 103 (427)
T Consensus 4 pl~gkkILIVDDd~~~r~~l~~~L-----~~~G~~V~~A~nG~eAl~~l~~~-~pDLIi~Dl~MP~mdGlell~~lr~~- 76 (337)
T PRK10693 4 PLVGKQILIVEDEPVFRSLLDSWF-----SSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRMNGLKFVEHLRNR- 76 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH-
T ss_conf 888998999949999999999999-----97899999989999999998658-99999996899999989999999985-
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHHHHCC
Q ss_conf 8998089981687189999999765626431899-9899999763102
Q gi|254780725|r 104 DSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPL-SVADIINSISAIF 150 (427)
Q Consensus 104 ~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~-~~~~l~~ai~~~~ 150 (427)
T Consensus 77 ~~~~PVIvlTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l 124 (337)
T PRK10693 77 GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACL 124 (337)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 899649999868999999999974995899789699999999999875