HHsearch alignment for GI: 254780725 and conserved domain: PRK10816
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=99.26 E-value=2.2e-10 Score=82.95 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=92.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
T Consensus 6 vEdd~~~~~~l~~~-----L~~~g~~V~~a~~~~~al~~~~~~-~~dlvilD~~lp~~~G~~l~~~ir~~-~~~~piI~l 78 (223)
T PRK10816 6 VEDNALLRHHLKVQ-----LQDAGHQVDAAEDAKEADYYLNEH-LPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVL 78 (223)
T ss_pred EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHCC-CCCCCEEEE
T ss_conf 95989999999999-----997899999989999999999757-99899997999898864001201104-898768999
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 1687189999999765626431899989999976310233
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 79 ta~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 4445677899999869988641897778999999999665