HHsearch alignment for GI: 254780725 and conserved domain: PRK10816

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional.
Probab=99.26  E-value=2.2e-10  Score=82.95  Aligned_cols=112  Identities=13%  Similarity=0.245  Sum_probs=92.7

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r   34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI  112 (427)
Q Consensus        34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi  112 (427)
T Consensus         6 vEdd~~~~~~l~~~-----L~~~g~~V~~a~~~~~al~~~~~~-~~dlvilD~~lp~~~G~~l~~~ir~~-~~~~piI~l   78 (223)
T PRK10816          6 VEDNALLRHHLKVQ-----LQDAGHQVDAAEDAKEADYYLNEH-LPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVL   78 (223)
T ss_pred             EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHCC-CCCCCEEEE
T ss_conf             95989999999999-----997899999989999999999757-99899997999898864001201104-898768999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             1687189999999765626431899989999976310233
Q gi|254780725|r  113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        79 ta~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr  118 (223)
T PRK10816         79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR  118 (223)
T ss_pred             ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf             4445677899999869988641897778999999999665