HHsearch alignment for GI: 254780725 and conserved domain: PRK10867

>PRK10867 signal recognition particle protein; Provisional.
Probab=98.39  E-value=6.8e-05  Score=49.25  Aligned_cols=173  Identities=10%  Similarity=0.094  Sum_probs=99.8

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf             37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r  162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA  241 (427)
Q Consensus       162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~  241 (427)
T Consensus       101 ~VIm~vG-LqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL-----------------------~~la~~--  154 (453)
T PRK10867        101 AVVLMAG-LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL-----------------------ETLAEQ--  154 (453)
T ss_pred             EEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-----------------------HHHHHH--
T ss_conf             6999974-68885185899999999973898379855887705899999-----------------------999985--


Q ss_pred             CCEEEEECCCCCCCHHCCCHHHHHHHHH-HHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf             9806872487612032079999999899-985128889973888889899--------9998620125435787768899
Q gi|254780725|r  242 ENLSILTAPAMLSRTYDFDEKMIVPVLD-ILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLR  312 (427)
Q Consensus       242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~-~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr  312 (427)
T Consensus       155 ~~v~~~~~~~~~d-p~~i----a~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q  227 (453)
T PRK10867        155 VGVDFFPSDVGQK-PVDI----VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--Q  227 (453)
T ss_pred             CCCCEECCCCCCC-HHHH----HHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--H
T ss_conf             1980436788998-8999----9999999997799999997876012108889999999876378713797432235--6


Q ss_pred             HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf             9999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r  313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG  371 (427)
Q Consensus       313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~  371 (427)
T Consensus       228 ~a~~~a~~F~~~~---~~~gvIlTKlDgdarGG~al-S~~~~t~~PI~FiG~GEk~ddle~F~p~r~a  291 (453)
T PRK10867        228 DAANTAKAFNEAL---PLTGVVLTKVDGDARGGAAL-SIRHITGKPIKFLGVGEKTDALEPFHPDRIA  291 (453)
T ss_pred             HHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf             6899999999855---98707875046787613898-9999978696788669982458876848999