HHsearch alignment for GI: 254780725 and conserved domain: PRK11083
>PRK11083 DNA-binding response regulator CreB; Provisional.
Probab=99.42 E-value=2.2e-11 Score=89.20 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=96.2
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 59998389899999998864110020223730-69989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
T Consensus 5 kILiVEDd~~l~~~l~~~-----L~~~g~~v~~~~~~~~al~~~~~~-~~DlvilDi~LP~~~G~~l~~~iR~~-~~~~p 77 (229)
T PRK11083 5 TILLVEDEQAIADTLVYA-----LQSEGFTVEWFERGLPALDKLRQQ-PPDLVILDVGLPDISGFELCRQLRAF-HPALP 77 (229)
T ss_pred EEEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHH-CCCCE
T ss_conf 999996999999999999-----998899999989999999999718-99899973889998768899999970-89972
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 899816871899999997656264318999899999763102332
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ 153 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~ 153 (427)
T Consensus 78 II~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~ 122 (229)
T PRK11083 78 VIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (229)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999836789899999997599877308742899999999999764