HHsearch alignment for GI: 254780725 and conserved domain: PRK11107
>PRK11107 hybrid sensory histidine kinase BarA; Provisional.
Probab=99.01 E-value=3.5e-08 Score=69.46 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=56.1
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCC
Q ss_conf 0599983898999999988641100202237306998999999861899849999805987677889998-885328998
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEP-LAEVCDSGT 107 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~-la~~~~p~~ 107 (427)
T Consensus 537 ~~vlvve~~~~~~~~l~~~L~~~-----g~~v~~~~~---~~~l~~-~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 607 (920)
T PRK11107 537 KRLLYVEPNSLAAQATLDLLSET-----PLEVTYSPT---LSQLPE-AHYDYLLLGCPVTFREPLTMLHERLAKAKSMTD 607 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC-----CCEEEECCC---HHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 76999769778999999999974-----964575178---877513-688879961666665406678999863003578
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 08998168718999999976562643189998999997631
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
T Consensus 608 ~~il~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 608 FLILALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 46997156434557887642530211277768899998722