HHsearch alignment for GI: 254780725 and conserved domain: PRK11173
>PRK11173 two-component response regulator; Provisional.
Probab=99.17 E-value=1.1e-09 Score=78.64 Aligned_cols=116 Identities=10% Similarity=0.149 Sum_probs=92.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7305999838989999999886411002022373-069989999998618998499998059876778899988853289
Q gi|254780725|r 27 PRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS 105 (427)
Q Consensus 27 ~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p 105 (427)
T Consensus 4 ~~ILi--VEDD~~~~~~l~~~-----L~~~G~~V~~a~~~~ea~~~l~~~-~~DlvilDi~lp~~~G~~l~~~iR~~--~ 73 (237)
T PRK11173 4 PHILI--VEDELVTRNTLKSI-----FEAEGYDVFEATDGAEMHQILSEN-DINLVIMDINLPGKNGLLLARELREQ--A 73 (237)
T ss_pred CEEEE--EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHC--C
T ss_conf 98999--95989999999999-----998899999989999999998638-99899993899988730355566516--8
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 98089981687189999999765626431899989999976310233
Q gi|254780725|r 106 GTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 106 ~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 74 ~~piI~lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r 120 (237)
T PRK11173 74 NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 84789994325778899999769767887898879999999999866