HHsearch alignment for GI: 254780725 and conserved domain: PRK11517

>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.30  E-value=1.4e-10  Score=84.26  Aligned_cols=114  Identities=15%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r   31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV  109 (427)
Q Consensus        31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V  109 (427)
T Consensus         3 ILiVEDd~~l~~~l~~~-----L~~~g~~V~~a~~g~~al~~~~~~-~~DlvilDi~lP~~dG~~l~~~iR~~--~~~pI   74 (223)
T PRK11517          3 ILLIEDNQRTQEWVTQG-----LSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMDGWQILQTLRTA--KQTPV   74 (223)
T ss_pred             EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf             99996989999999999-----998899999989999999998528-99999984999873689999999856--88648


Q ss_pred             EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             9981687189999999765626431899989999976310233
Q gi|254780725|r  110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        75 I~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr  117 (223)
T PRK11517         75 ICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ  117 (223)
T ss_pred             EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             9995655657899999839877620897789999999999641