HHsearch alignment for GI: 254780725 and conserved domain: PRK11517
>PRK11517 transcriptional regulatory protein YedW; Provisional.
Probab=99.30 E-value=1.4e-10 Score=84.26 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=95.7
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
T Consensus 3 ILiVEDd~~l~~~l~~~-----L~~~g~~V~~a~~g~~al~~~~~~-~~DlvilDi~lP~~dG~~l~~~iR~~--~~~pI 74 (223)
T PRK11517 3 ILLIEDNQRTQEWVTQG-----LSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMDGWQILQTLRTA--KQTPV 74 (223)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf 99996989999999999-----998899999989999999998528-99999984999873689999999856--88648
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 75 I~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 75 ICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9995655657899999839877620897789999999999641