HHsearch alignment for GI: 254780725 and conserved domain: PRK12723

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.06  E-value=0.00019  Score=46.51  Aligned_cols=162  Identities=12%  Similarity=0.089  Sum_probs=88.1

Q ss_pred             CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf             6753799974698877568999999999962699---4999978798986033438998789888631845612433765
Q gi|254780725|r  159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAM---ETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSR  235 (427)
Q Consensus       159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~---~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~  235 (427)
T Consensus       172 ~k~~vi~lVG-PTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya~il-------------  232 (388)
T PRK12723        172 LKKRIFILVG-PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYGDIM-------------  232 (388)
T ss_pred             CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHHHHH-------------
T ss_conf             5762899989-98875787999999999986267677379998078758899999-----9999997-------------


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH------HHHHHHHHC--C-CCCCCCCC
Q ss_conf             32024898068724876120320799999998999851288899738888898------999998620--1-25435787
Q gi|254780725|r  236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS------WTQEVLTLS--D-KVVITTSL  306 (427)
Q Consensus       236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~------~~~~~L~~A--D-~vviV~~p  306 (427)
T Consensus       233 -------~vp~~v~---------~~~~dl~~~l~~~-~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa  295 (388)
T PRK12723        233 -------GIPVKAI---------ESFKDLKEEITQS-KDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS  295 (388)
T ss_pred             -------CCCEEEE---------CCHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             -------8806985---------7889999999972-4999999958998856899999999999741898459999879


Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             76889999999999998198767538999565898752005999999848953799
Q gi|254780725|r  307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI  362 (427)
Q Consensus       307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~  362 (427)
T Consensus       296 t~-~~~d~~~i~~~f~~~~~----~~~I~TKlDEt~~~G-~~l~~~~~~~~Pi~yi  345 (388)
T PRK12723        296 TT-KTSDIKEIFHQFSPFSY----KTVIFTKLDETTCVG-NLISLIHEMRKEVSYV  345 (388)
T ss_pred             CC-CHHHHHHHHHHHCCCCC----CEEEEEECCCCCCCC-HHHHHHHHHCCCEEEE
T ss_conf             89-99999999998427999----849998322789866-9999999988886999