HHsearch alignment for GI: 254780725 and conserved domain: PRK12723
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.06 E-value=0.00019 Score=46.51 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=88.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 6753799974698877568999999999962699---4999978798986033438998789888631845612433765
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAM---ETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~---~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
T Consensus 172 ~k~~vi~lVG-PTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya~il------------- 232 (388)
T PRK12723 172 LKKRIFILVG-PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYGDIM------------- 232 (388)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHHHHH-------------
T ss_conf 5762899989-98875787999999999986267677379998078758899999-----9999997-------------
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH------HHHHHHHHC--C-CCCCCCCC
Q ss_conf 32024898068724876120320799999998999851288899738888898------999998620--1-25435787
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS------WTQEVLTLS--D-KVVITTSL 306 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~------~~~~~L~~A--D-~vviV~~p 306 (427)
T Consensus 233 -------~vp~~v~---------~~~~dl~~~l~~~-~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa 295 (388)
T PRK12723 233 -------GIPVKAI---------ESFKDLKEEITQS-KDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred -------CCCEEEE---------CCHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf -------8806985---------7889999999972-4999999958998856899999999999741898459999879
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 76889999999999998198767538999565898752005999999848953799
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI 362 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~ 362 (427)
T Consensus 296 t~-~~~d~~~i~~~f~~~~~----~~~I~TKlDEt~~~G-~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 296 TT-KTSDIKEIFHQFSPFSY----KTVIFTKLDETTCVG-NLISLIHEMRKEVSYV 345 (388)
T ss_pred CC-CHHHHHHHHHHHCCCCC----CEEEEEECCCCCCCC-HHHHHHHHHCCCEEEE
T ss_conf 89-99999999998427999----849998322789866-9999999988886999