HHsearch alignment for GI: 254780725 and conserved domain: PRK12724

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.07  E-value=0.00055  Score=43.68  Aligned_cols=208  Identities=15%  Similarity=0.171  Sum_probs=105.7

Q ss_pred             HHHHHHHHHCCCCEEECC-----------CCCH---H----HHHHHHHHCCCC-CC--CCCC-CCCEEEEEEECCCCCCH
Q ss_conf             899999997656264318-----------9998---9----999976310233-22--2345-67537999746988775
Q gi|254780725|r  118 VSLYRALISNHVSEYLIE-----------PLSV---A----DIINSISAIFTP-QE--EGKG-SSGCSISFIGSRGGVGS  175 (427)
Q Consensus       118 ~~l~r~l~r~Gv~dyl~~-----------P~~~---~----~l~~ai~~~~~~-~~--~~~~-~~grvIav~g~KGGvGk  175 (427)
T Consensus       158 ~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVGP-TGVGK  236 (432)
T PRK12724        158 QRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGP-TGSGK  236 (432)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECC-CCCCH
T ss_conf             99999998756688999999999987538100110678999999999987147740110357777629999899-99888


Q ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             68999999999962699499997879898603343899878988863184561243376532024898068724876120
Q gi|254780725|r  176 STIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSR  255 (427)
Q Consensus       176 TTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~  255 (427)
T Consensus       237 TTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL-----ktYa~Il--------------------~iPv~v-------  284 (432)
T PRK12724        237 TTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL-----KRYADTM--------------------GMPFYP-------  284 (432)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHHHHHH--------------------CCCEEE-------
T ss_conf             99999999999997499279995266537799999-----9999985--------------------994599-------


Q ss_pred             HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--H----HHHHHHH---CC--CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             320799999998999851288899738888898--9----9999862---01--25435787768899999999999981
Q gi|254780725|r  256 TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--W----TQEVLTL---SD--KVVITTSLDLAGLRNSKNLIDVLKKL  324 (427)
Q Consensus       256 ~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~----~~~~L~~---AD--~vviV~~p~~~slr~a~~ll~~l~~~  324 (427)
T Consensus       285 --v~~~~el~~al~~--~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt-k~~dl~~ii~~f~~l  359 (432)
T PRK12724        285 --VKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTLTVLKAYESL  359 (432)
T ss_pred             --EECHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHHHCCC
T ss_conf             --5189999999985--69999999299989789999999999998636678851799997889-989999999984269


Q ss_pred             CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHH
Q ss_conf             98767538999565898752005999999848953799-----068799
Q gi|254780725|r  325 RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGA  368 (427)
Q Consensus       325 ~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~  368 (427)
T Consensus       360 ~~~----~lIfTKLDET~s~G-~ilni~~~~~~PisYiT~GQ~VPdDI~  403 (432)
T PRK12724        360 NYR----RILLTKLDEADFLG-SFLELADTYSKSFTYLSVGQEVPFDIL  403 (432)
T ss_pred             CCC----EEEEEECCCCCCCC-HHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf             998----49997122779866-999999998898699808997971733