HHsearch alignment for GI: 254780725 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.07 E-value=0.00055 Score=43.68 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=105.7
Q ss_pred HHHHHHHHHCCCCEEECC-----------CCCH---H----HHHHHHHHCCCC-CC--CCCC-CCCEEEEEEECCCCCCH
Q ss_conf 899999997656264318-----------9998---9----999976310233-22--2345-67537999746988775
Q gi|254780725|r 118 VSLYRALISNHVSEYLIE-----------PLSV---A----DIINSISAIFTP-QE--EGKG-SSGCSISFIGSRGGVGS 175 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~-----------P~~~---~----~l~~ai~~~~~~-~~--~~~~-~~grvIav~g~KGGvGk 175 (427)
T Consensus 158 ~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVGP-TGVGK 236 (432)
T PRK12724 158 QRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGP-TGSGK 236 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECC-CCCCH
T ss_conf 99999998756688999999999987538100110678999999999987147740110357777629999899-99888
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 68999999999962699499997879898603343899878988863184561243376532024898068724876120
Q gi|254780725|r 176 STIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSR 255 (427)
Q Consensus 176 TTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~ 255 (427)
T Consensus 237 TTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL-----ktYa~Il--------------------~iPv~v------- 284 (432)
T PRK12724 237 TTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL-----KRYADTM--------------------GMPFYP------- 284 (432)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHHHHHH--------------------CCCEEE-------
T ss_conf 99999999999997499279995266537799999-----9999985--------------------994599-------
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--H----HHHHHHH---CC--CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 320799999998999851288899738888898--9----9999862---01--25435787768899999999999981
Q gi|254780725|r 256 TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--W----TQEVLTL---SD--KVVITTSLDLAGLRNSKNLIDVLKKL 324 (427)
Q Consensus 256 ~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~----~~~~L~~---AD--~vviV~~p~~~slr~a~~ll~~l~~~ 324 (427)
T Consensus 285 --v~~~~el~~al~~--~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt-k~~dl~~ii~~f~~l 359 (432)
T PRK12724 285 --VKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTLTVLKAYESL 359 (432)
T ss_pred --EECHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHHHCCC
T ss_conf --5189999999985--69999999299989789999999999998636678851799997889-989999999984269
Q ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHH
Q ss_conf 98767538999565898752005999999848953799-----068799
Q gi|254780725|r 325 RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGA 368 (427)
Q Consensus 325 ~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~ 368 (427)
T Consensus 360 ~~~----~lIfTKLDET~s~G-~ilni~~~~~~PisYiT~GQ~VPdDI~ 403 (432)
T PRK12724 360 NYR----RILLTKLDEADFLG-SFLELADTYSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred CCC----EEEEEECCCCCCCC-HHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 998----49997122779866-999999998898699808997971733