HHsearch alignment for GI: 254780725 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.29 E-value=3.5e-05 Score=51.06 Aligned_cols=184 Identities=15% Similarity=0.200 Sum_probs=97.8
Q ss_pred CHHHHHHHHHCCCCEEECC--------CCCHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1899999997656264318--------999899----9997631023322234567537999746988775689999999
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIE--------PLSVAD----IINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAF 184 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~--------P~~~~~----l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~ 184 (427)
T Consensus 292 ra~L~krL~~~GfS~~Lar~L~~~lP~~~~~~~a~~~ll~~La~~Lpv~~~d~~~~gGv~AlvG-pTGvGKTTT~aKlAa 370 (557)
T PRK12727 292 RAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVG-PTGAGKTTTIAKLAQ 370 (557)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEC-CCCCCCHHHHHHHHH
T ss_conf 8999999997669999999999748332788899999999999628777775154076478743-777673117999999
Q ss_pred HHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHH
Q ss_conf 9996269-949999787989860334389987898886318456124337653202489806872487612032079999
Q gi|254780725|r 185 SIASVFA-METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKM 263 (427)
Q Consensus 185 ~LA~~~~-~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~ 263 (427)
T Consensus 371 ~~~~~~g~~~valit~DtyRiga------------~eQL~~y~--------~il-----gvpv~~~---------~~~~~ 416 (557)
T PRK12727 371 RFAAQHAPRDVALVTTDTQRVGG------------REQLHSYG--------RQL-----GIAVHEA---------DSAES 416 (557)
T ss_pred HHHHHCCCCEEEEEECCCCCHHH------------HHHHHHHH--------HHH-----CCEEEEE---------CCHHH
T ss_conf 99997399818999726640879------------99999999--------983-----9757982---------89999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCC--CHH-H--HHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99989998512888997388888--989-9--9998620125--435787768899999999999981987675389995
Q gi|254780725|r 264 IVPVLDILEQIFPLVILDVPHVW--NSW-T--QEVLTLSDKV--VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 264 l~~ll~~l~~~yd~VIiD~p~~~--~~~-~--~~~L~~AD~v--viV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
T Consensus 417 l~~~l~~l~-~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~-~~~~~l~~~~~~~~~~~~----~~~i~T 490 (557)
T PRK12727 417 LLDLLERLR-DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN-AHFSDLDEVVRRFAHAKP----QGVVLT 490 (557)
T ss_pred HHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC-CCHHHHHHHHHHHCCCCC----CEEEEE
T ss_conf 999999836-99989994999884699999999987514776359999688-998999999998537998----748996
Q ss_pred CCCCC
Q ss_conf 65898
Q gi|254780725|r 337 QVKTP 341 (427)
Q Consensus 337 r~~~~ 341 (427)
T Consensus 491 KlDE~ 495 (557)
T PRK12727 491 KLDET 495 (557)
T ss_pred ECCCC
T ss_conf 14367