HHsearch alignment for GI: 254780725 and conserved domain: PRK13234
>PRK13234 nifH nitrogenase reductase; Reviewed.
Probab=99.98 E-value=4.5e-30 Score=204.05 Aligned_cols=257 Identities=13% Similarity=0.162 Sum_probs=199.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
T Consensus 4 mr~IAiYG-KGGIGKSTtssNlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G 81 (293)
T PRK13234 4 LRQIAFYG-KGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (293)
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 75799977-9844587789999999997-799699974898316568762899997088998764981215387897437
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-----CCCEEEECCCCC-CCHHHHHHH--HHCCCCCCCCCCCHHHHH
Q ss_conf 898068724876120320799999998999851-----288899738888-898999998--620125435787768899
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-----IFPLVILDVPHV-WNSWTQEVL--TLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-----~yd~VIiD~p~~-~~~~~~~~L--~~AD~vviV~~p~~~slr 312 (427)
T Consensus 82 ~~gI~CVEsGGP-ePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCGGFAmPir~g~A~evyIVtSge~msly 160 (293)
T PRK13234 82 YKGIKCVESGGP-EPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALY 160 (293)
T ss_pred CCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
T ss_conf 798489768998-9988877713146788887718765799999956776651475566545887689999467187999
Q ss_pred HHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999999981--987675389995658987520059999998489537990687999999884796189888999899
Q gi|254780725|r 313 NSKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 313 ~a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
T Consensus 161 AANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e-~~~v~~fa~~~gt~ii~~IPrs~-~v~~aE~~~~TviE~~P~s~~A 238 (293)
T PRK13234 161 AANNIAKGILKYANSGGVRLGGLICNERQTDRE-LELAEALAKRLGSKLIHFVPRDN-IVQHAELRRMTVIEYAPDSKQA 238 (293)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH-HHHHHHHHHHHCCCEEEECCCCH-HHHHHHHCCCEEEEECCCCHHH
T ss_conf 999999999998632696246899717898537-99999999984993799779968-8999997397778968898799
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf 99999999985221-223211105899998742
Q gi|254780725|r 391 NLLVDFSRVLMGRV-TVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 391 ~~~~~La~~i~gr~-~~~~~k~~~~~~l~~lf~ 422 (427)
T Consensus 239 ~~Yr~LA~~I~~n~~~~~iP~Pl~~~eL~~l~~ 271 (293)
T PRK13234 239 GEYRALAEKIHANSGKGTIPTPITMEELEDMLM 271 (293)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999984788700188899899999999