HHsearch alignment for GI: 254780725 and conserved domain: PRK13409
>PRK13409 putative ATPase RIL; Provisional.
Probab=93.79 E-value=0.49 Score=25.55 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=69.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCC-CCHHHHHHHHHH
Q ss_conf 6753799974698877568999999999962699499997879898603343899878988863184-561243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPV-GRIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~-~rlD~~~l~~~l 237 (427)
T Consensus 363 ~~GEiigIvG-~NGaGKTTLlKiLaG~lkPd~G-~V-~--~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~~~~el 437 (590)
T PRK13409 363 RKGEVIGIVG-PNGIGKTTFVKLLAGVLKPDEG-EV-D--TDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI 437 (590)
T ss_pred ECCCEEEEEC-CCCCCHHHHHHHHHCCCCCCCC-EE-E--ECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 0474899988-8888789999998288778874-47-5--4774873360014686881999998624422538999999
Q ss_pred HCCCCCEEEEECCCCCC-CHHCCCHHHHHH--HHHHHHHCCCEEEECCCCCCCH-HH--------HHHHHHCCCCCCCCC
Q ss_conf 02489806872487612-032079999999--8999851288899738888898-99--------999862012543578
Q gi|254780725|r 238 VFYAENLSILTAPAMLS-RTYDFDEKMIVP--VLDILEQIFPLVILDVPHVWNS-WT--------QEVLTLSDKVVITTS 305 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~-~~~~~~~~~l~~--ll~~l~~~yd~VIiD~p~~~~~-~~--------~~~L~~AD~vviV~~ 305 (427)
T Consensus 438 l~---~L~l---~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~~~~~~~~t~~vV~ 511 (590)
T PRK13409 438 IK---PLNL---EKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRRIAEEKEKAALVVD 511 (590)
T ss_pred HH---HHCC---HHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98---8788---86764962440989999999999866799999994898877889999999999999986697599994
Q ss_pred CCHH
Q ss_conf 7768
Q gi|254780725|r 306 LDLA 309 (427)
Q Consensus 306 p~~~ 309 (427)
T Consensus 512 HD~~ 515 (590)
T PRK13409 512 HDIY 515 (590)
T ss_pred CCHH
T ss_conf 7099