HHsearch alignment for GI: 254780725 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.04 E-value=3.8e-05 Score=50.81 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=77.3
Q ss_pred HHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 11002022373069989999998618998499998059876778899988853289980899816871899999997656
Q gi|254780725|r 50 DPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHV 129 (427)
Q Consensus 50 drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv 129 (427)
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe~-~p~lP~Il~t~~gsE~vas~AI~AGv 112 (674)
T PRK13558 35 DLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQT-HAEFPVVVVPTAVDEDVARRAVDADA 112 (674)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHCH
T ss_conf 566677421276323888986531589-8769965657888679999998613-89998899956785899999875163
Q ss_pred CEEECCCCCHHHHHHHHHHCC
Q ss_conf 264318999899999763102
Q gi|254780725|r 130 SEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 130 ~dyl~~P~~~~~l~~ai~~~~ 150 (427)
T Consensus 113 t~Ylp~--~~~~~~~~~~~~i 131 (674)
T PRK13558 113 TGLVPA--VSEDATAAIADRI 131 (674)
T ss_pred HHHCCC--CCHHHHHHHHHHH
T ss_conf 643344--7176899999999