HHsearch alignment for GI: 254780725 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=98.04  E-value=3.8e-05  Score=50.81  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=77.3

Q ss_pred             HHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf             11002022373069989999998618998499998059876778899988853289980899816871899999997656
Q gi|254780725|r   50 DPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHV  129 (427)
Q Consensus        50 drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv  129 (427)
T Consensus        35 ~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe~-~p~lP~Il~t~~gsE~vas~AI~AGv  112 (674)
T PRK13558         35 DLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQT-HAEFPVVVVPTAVDEDVARRAVDADA  112 (674)
T ss_pred             CCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHCH
T ss_conf             566677421276323888986531589-8769965657888679999998613-89998899956785899999875163


Q ss_pred             CEEECCCCCHHHHHHHHHHCC
Q ss_conf             264318999899999763102
Q gi|254780725|r  130 SEYLIEPLSVADIINSISAIF  150 (427)
Q Consensus       130 ~dyl~~P~~~~~l~~ai~~~~  150 (427)
T Consensus       113 t~Ylp~--~~~~~~~~~~~~i  131 (674)
T PRK13558        113 TGLVPA--VSEDATAAIADRI  131 (674)
T ss_pred             HHHCCC--CCHHHHHHHHHHH
T ss_conf             643344--7176899999999