HHsearch alignment for GI: 254780725 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=99.88 E-value=6.3e-21 Score=147.84 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=122.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~-s~~~W~e---------~a~~~~~~------------~ 58 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENR-PLTRWKE---------NALRSNTW------------D 58 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-CHHHHHH---------HHHHCCCC------------C
T ss_conf 379996189987699999999999997-89959999689986-8899998---------76525898------------8
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 980687248761203207999999989998-5128889973888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
T Consensus 59 ~~~~v~~~---------~~~~~l~~~~e~~~~~~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~ 129 (231)
T PRK13849 59 PACEVYAA---------DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALSTYRY 129 (231)
T ss_pred CCCCEEEC---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77523405---------652578999988753699889981899775899999997898997799986679999999999
Q ss_pred HHHC---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCC
Q ss_conf 9981---98767538999565898752005999999848-95379906879999998847961
Q gi|254780725|r 321 LKKL---RPADKPPYLVLNQVKTPKKPEISISDFCAPLG-ITPSAIIPFDGAVFGMSANSGKM 379 (427)
Q Consensus 321 l~~~---~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg-~~~~~~IP~D~~~~~~A~~~G~p 379 (427)
T Consensus 130 i~~~~~~~~~~ip~~vlltRv~a~~-~t~~~~~i~~~le~lPvl~T~i~eR~Af~~i~~~G~L 191 (231)
T PRK13849 130 VIELLLSENLAIPTAILRQRVPVGR-LTTSQRAMSDMLESLPVVDSPMHERDAFAAMKERGML 191 (231)
T ss_pred HHHHHHHHCCCCCEEEEEEECCHHH-HCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCH
T ss_conf 9999997287886566654050454-0688999999996299555530227999999983514