HHsearch alignment for GI: 254780725 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=99.13 E-value=3.6e-09 Score=75.59 Aligned_cols=112 Identities=12% Similarity=0.210 Sum_probs=86.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99838989999999886411002022373-06998999999861899849999805987677889998885328998089
Q gi|254780725|r 32 HVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI 110 (427)
Q Consensus 32 ~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi 110 (427)
T Consensus 5 LlVEDD~~l~~~l~~~-----L~~~g~~v~~a~~~~~~~~~l~~~-~~DlvIlDi~lp~~~Gl~~~~~ir~~--~~~pii 76 (241)
T PRK13856 5 LVIDDDVAMRHLIVEY-----LTIHAFKVTAVADSQQFNRVLSSE-TVDVVVVDLNLGREDGLEIVRSLATK--SDVPII 76 (241)
T ss_pred EEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHCCC--CCCCEE
T ss_conf 9996989999999999-----987799999989999999998659-99999996999876613455564036--997369
Q ss_pred EEEC-CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9816-8718999999976562643189998999997631023
Q gi|254780725|r 111 VIGD-TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 111 vig~-~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 77 ilt~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr 118 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 997267878999999876998899777677799999999987