HHsearch alignment for GI: 254780725 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=100.00 E-value=4.9e-31 Score=209.97 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=169.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCC------CHHHHHCCCCCHHHHHH
Q ss_conf 753799974698877568999999999962699499997879898603343899878------98886318456124337
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPIN------SISDAIYPVGRIDKAFV 233 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~------~l~d~l~~~~rlD~~~l 233 (427)
T Consensus 120 ~~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G~RVLlIDLDPQ-gnlS~~lG~~pe~d~~~~~tl~~~l~~d~~--~~~l 195 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQ-ASLSALLGVLPETDVGANETLYAAIRYDDT--RRPL 195 (405)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCH
T ss_conf 98289997888776599999999999997-7998899964561-788898089854566531359999844545--5879
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCHHCCC--------------HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 65320-2489806872487612032079--------------99999989998512888997388888989999986201
Q gi|254780725|r 234 SRLPV-FYAENLSILTAPAMLSRTYDFD--------------EKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSD 298 (427)
Q Consensus 234 ~~~l~-~~~~gL~lL~a~~~~~~~~~~~--------------~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD 298 (427)
T Consensus 196 ~~~I~~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v~d~YDvIiIDcPPsLg~lT~nAL~AAd 275 (405)
T PRK13869 196 RDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAAT 275 (405)
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 99521679999689589889999888759998743315568999999999864412998999599826599999999828
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCC--CCCEEEEECCCCCCCCH-HHHHHHHHHHCCCEE-EEECCCH
Q ss_conf 254357877688999999999999-------819876--75389995658987520-059999998489537-9906879
Q gi|254780725|r 299 KVVITTSLDLAGLRNSKNLIDVLK-------KLRPAD--KPPYLVLNQVKTPKKPE-ISISDFCAPLGITPS-AIIPFDG 367 (427)
Q Consensus 299 ~vviV~~p~~~slr~a~~ll~~l~-------~~~~~~--~~~~iVlNr~~~~~~~~-i~~~~~~~~lg~~~~-~~IP~D~ 367 (427)
T Consensus 276 ~vlIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr~d~~~~~~~~v~~~lr~~fg~~Vl~~~i~~S- 354 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKS- 354 (405)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH-
T ss_conf 6386489608789999999999999999999707887854045631406899825999999999998788860807377-
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9999988479618988899989999999999
Q gi|254780725|r 368 AVFGMSANSGKMIHEVDPKSAIANLLVDFSR 398 (427)
Q Consensus 368 ~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~ 398 (427)
T Consensus 355 ~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e 385 (405)
T PRK13869 355 AAVSDAGLTKQTLYEIGRENLTRSTYDRAME 385 (405)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 9999868744962876505278899999999