HHsearch alignment for GI: 254780725 and conserved domain: PTZ00099
>PTZ00099 rab6; Provisional.
Probab=94.98 E-value=0.27 Score=27.16 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=78.8
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 288899738888--8989999986201254357877-6889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
T Consensus 28 ~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~ee 107 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEE 107 (176)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHH
T ss_conf 99999997998634135768870798679998504207789999999999998538877439998556558616859999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9998489537990687999999884796189888999--89999999999985221
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRV 404 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~ 404 (427)
T Consensus 108 ------------------~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~~ 145 (176)
T PTZ00099 108 ------------------GMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ------------------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCHH
T ss_conf ------------------99999985999999848999498999999999860802