HHsearch alignment for GI: 254780725 and conserved domain: TIGR00313

>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.66  E-value=3.3e-08  Score=69.60  Aligned_cols=193  Identities=18%  Similarity=0.250  Sum_probs=121.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC-----CCCCCHHHH-------HCCCCCHHHH
Q ss_conf             9997469887756899999999996269949999787989860334389-----987898886-------3184561243
Q gi|254780725|r  164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK-----DPINSISDA-------IYPVGRIDKA  231 (427)
Q Consensus       164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~-----~~~~~l~d~-------l~~~~rlD~~  231 (427)
T Consensus         1 iMV~GTsS~AGKs~l~AaLCRiL~r-rGy~VA------PFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPv   73 (502)
T TIGR00313         1 IMVVGTSSSAGKSLLTAALCRILAR-RGYRVA------PFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPV   73 (502)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCC------CCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9542011540289999999999852-788127------850110101333113787551376899986387886234871


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHH-------CCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH----------HHHH
Q ss_conf             37653202489806872487612032-------079999999899985128889973888889899----------9998
Q gi|254780725|r  232 FVSRLPVFYAENLSILTAPAMLSRTY-------DFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT----------QEVL  294 (427)
Q Consensus       232 ~l~~~l~~~~~gL~lL~a~~~~~~~~-------~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~----------~~~L  294 (427)
T Consensus        74 LLKPkgdf-~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~  152 (502)
T TIGR00313        74 LLKPKGDF-TSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAEL  152 (502)
T ss_pred             CCCCCCCC-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             01678884-66789841124667615677799999999999999875202888998268871000533157224789864


Q ss_pred             HHCCCCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf             62012543578776----88999999999999819876753899956589875-20059999998489537990687999
Q gi|254780725|r  295 TLSDKVVITTSLDL----AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPFDGAV  369 (427)
Q Consensus       295 ~~AD~vviV~~p~~----~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~D~~~  369 (427)
T Consensus       153 ~~A~-~iLvADIDRGGVFAsi~GTl~LL~~~~r~----liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLGv~PY~~~l  227 (502)
T TIGR00313       153 ADAD-VILVADIDRGGVFASIYGTLKLLPEEERK----LIKGIVINKFRGNVDVLESGIEKLEELTGIPVLGVLPYDENL  227 (502)
T ss_pred             CCCC-EEEEEECCCCCCHHHHHHHHHHCCCCCCC----EECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             3976-79997507774324337466618834575----003068835468724434456899885484234465012577