HHsearch alignment for GI: 254780725 and conserved domain: TIGR01387

>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.10  E-value=9.6e-11  Score=85.22  Aligned_cols=142  Identities=12%  Similarity=0.147  Sum_probs=110.4

Q ss_pred             ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf             38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r   35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD  114 (427)
Q Consensus        35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~  114 (427)
T Consensus         5 EDeqkT~~YlqqG-----LsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~-~~~~PVl~LTA   78 (219)
T TIGR01387         5 EDEQKTAEYLQQG-----LSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRS-GKETPVLFLTA   78 (219)
T ss_pred             ECCCCHHHHHHCC-----CCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCC-CCCCCEEEEEC
T ss_conf             3086026765305-----20123479887768624754368883089963258895068999998407-89873488833


Q ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCC-------------------CCCEEEEEEECCCCCCH
Q ss_conf             87189999999765626431899989999976310233222345-------------------67537999746988775
Q gi|254780725|r  115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKG-------------------SSGCSISFIGSRGGVGS  175 (427)
Q Consensus       115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~-------------------~~grvIav~g~KGGvGk  175 (427)
T Consensus        79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~~~~~~~evl~i~DL~~D~~~~~v~R~~~~I~LT~-------  151 (219)
T TIGR01387        79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRSESLESTEVLEIADLELDVVRRRVFRGSKRIELTR-------  151 (219)
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCEEEEEECCEEEEECH-------
T ss_conf             7884543530114786541378776037999998767752037676268605575121038875682687303-------


Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             6899999999996269
Q gi|254780725|r  176 STIAHNCAFSIASVFA  191 (427)
Q Consensus       176 TTiA~nLA~~LA~~~~  191 (427)
T Consensus       152 --kEF~LL~lL~~r~G  165 (219)
T TIGR01387       152 --KEFALLELLMRRTG  165 (219)
T ss_pred             --HHHHHHHHHHHHCC
T ss_conf             --67899999997488