HHsearch alignment for GI: 254780725 and conserved domain: TIGR02915
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.10 E-value=6.2e-10 Score=80.23 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=110.0
Q ss_pred EEECCCHHHHHHHHHCCCCCCEEEEECCCCC-----CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 7306998999999861899849999805987-----67788999888532899808998168718999999976562643
Q gi|254780725|r 59 RITRGSIAEAVSCFSDSSTPDLIIVQTKVDS-----REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYL 133 (427)
Q Consensus 59 ~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~-----~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl 133 (427)
T Consensus 24 ~~~A~DR~sAiA~vRRhe-P~VVTLDLGLPPd~d~a~EGl~~L~qIL~~-~P~TKVIViTGN~~r~NAlkAi~lGAYDFy 101 (451)
T TIGR02915 24 VAVAADRESAIALVRRHE-PAVVTLDLGLPPDADGASEGLAALQQILAI-APDTKVIVITGNDDRENALKAIGLGAYDFY 101 (451)
T ss_pred EEEECCHHHHHHHHHCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 355347578999860569-964773675578988745899999999963-898048998668983889999643751013
Q ss_pred CCCCCHHHHHHHHHHCCCCC-------------CCCCC----------------------CCCEEEEEEECCCCCCHHHH
Q ss_conf 18999899999763102332-------------22345----------------------67537999746988775689
Q gi|254780725|r 134 IEPLSVADIINSISAIFTPQ-------------EEGKG----------------------SSGCSISFIGSRGGVGSSTI 178 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~~~~~-------------~~~~~----------------------~~grvIav~g~KGGvGkTTi 178 (427)
T Consensus 102 qKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~sd~TvllLGESGTGKEV~ 181 (451)
T TIGR02915 102 QKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPSDITVLLLGESGTGKEVL 181 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 57875789999999988888888876998740688741036522068506789888652120000130104667117899
Q ss_pred HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999996269949999787
Q gi|254780725|r 179 AHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 179 A~nLA~~LA~~~~~~VlLvDlD 200 (427)
T Consensus 182 ArA~-H~~S~R~~~~FVAINCA 202 (451)
T TIGR02915 182 ARAL-HELSDRKDKRFVAINCA 202 (451)
T ss_pred HHHH-HHHCCCCCCCEEEEECC
T ss_conf 9898-42057897773444167