HHsearch alignment for GI: 254780725 and conserved domain: TIGR02928

>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=93.07  E-value=0.64  Score=24.82  Aligned_cols=186  Identities=12%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCC-EEEEECCCCCCCCHHHCCCCC
Q ss_conf             899999763102332223456753799974698877568999999999962---6994-999978798986033438998
Q gi|254780725|r  139 VADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV---FAME-TLLADLDLPYGTANINFDKDP  214 (427)
Q Consensus       139 ~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~---~~~~-VlLvDlDl~~g~~~~~l~~~~  214 (427)
T Consensus        26 I~~l~~~L~~~l~---PG~~P--~Ni~iYG-kTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~-----   94 (383)
T TIGR02928        26 IEELAKALRPILR---PGSRP--SNIFIYG-KTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQ-----   94 (383)
T ss_pred             HHHHHHHHHHHHC---CCCCC--CCEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH-----
T ss_conf             9999999887506---74898--7258878-88987889999999999998622699715899977854684699-----


Q ss_pred             CCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHH
Q ss_conf             7898886318456124337653202489806872487612032079999999899985-128889973888889899999
Q gi|254780725|r  215 INSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEV  293 (427)
Q Consensus       215 ~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~  293 (427)
T Consensus        95 --~~~~L~-----------~~ln-~~~~~~~vP~t-------G~s~~~~~~~l~~~l~~~~~~~~~i------------v  141 (383)
T TIGR02928        95 --VLVELA-----------NQLN-RRGSGEEVPTT-------GLSTSEVFRELYKELNRERGDSLII------------V  141 (383)
T ss_pred             --HHHHHH-----------HHHC-CCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCCEEEE------------E
T ss_conf             --999999-----------9851-57788889887-------7878999999999983201887999------------8


Q ss_pred             HHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCEEE--EECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf             8620125435787768899-9999999999819876753899--956589875200599999984895379906879999
Q gi|254780725|r  294 LTLSDKVVITTSLDLAGLR-NSKNLIDVLKKLRPADKPPYLV--LNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVF  370 (427)
Q Consensus       294 L~~AD~vviV~~p~~~slr-~a~~ll~~l~~~~~~~~~~~iV--lNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~  370 (427)
T Consensus       142 LDEiD~Lv-~~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvIgISND~~f--~~~Ld-~RVkSsL~~eei~FpPYdA~eL  217 (383)
T TIGR02928       142 LDEIDKLV-RKDDDDPAYSKLLYQLSRARENGDLENAKVGVIGISNDLKF--RENLD-PRVKSSLCEEEIVFPPYDAEEL  217 (383)
T ss_pred             ECCCCHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHH--HHHCC-CCEECCCCCCCCEECCCCHHHH
T ss_conf             62310221-58888807878853433100035778853489998657143--64457-5301324874004079886999


Q ss_pred             HH
Q ss_conf             99
Q gi|254780725|r  371 GM  372 (427)
Q Consensus       371 ~~  372 (427)
T Consensus       218 ~~  219 (383)
T TIGR02928       218 RD  219 (383)
T ss_pred             HH
T ss_conf             99