HHsearch alignment for GI: 254780725 and conserved domain: TIGR03453
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=100.00 E-value=4.1e-31 Score=210.45 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=170.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC------CCHHHHHCCCCCHHHH
Q ss_conf 5675379997469887756899999999996269949999787989860334389987------8988863184561243
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI------NSISDAIYPVGRIDKA 231 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~------~~l~d~l~~~~rlD~~ 231 (427)
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~-~G~RVLvIDLDPQ-anlT~~~G~~pe~d~~~~~tl~~~l~~d~~--~~ 176 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-RGYRVLAIDLDPQ-ASLSALFGFQPEFDVGENETLYGAIRYDDE--RR 176 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCH-HHHHHHCCCCCCCCCCCCCCHHHHHHCCCC--CC
T ss_conf 9988089997888765699999999999997-7998899953701-678875289843466756429999844556--68
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCHHC---------CC-----HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 37653202-4898068724876120320---------79-----999999899985128889973888889899999862
Q gi|254780725|r 232 FVSRLPVF-YAENLSILTAPAMLSRTYD---------FD-----EKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTL 296 (427)
Q Consensus 232 ~l~~~l~~-~~~gL~lL~a~~~~~~~~~---------~~-----~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~ 296 (427)
T Consensus 177 ~l~~~i~~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~~v~d~YD~IlIDcPPsLg~lT~nAL~A 256 (387)
T TIGR03453 177 PLSEIIRKTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALAEVEDDYDVVVIDCPPQLGFLTLSALCA 256 (387)
T ss_pred CHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 79996114799996896598899998898899997431100269999999999766029999995898513999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-------HHHHHCC--CCCCCCEEEEECCCCCCCCHH-HHHHHHHHHCCCE-EEEECC
Q ss_conf 0125435787768899999999-------9999819--876753899956589875200-5999999848953-799068
Q gi|254780725|r 297 SDKVVITTSLDLAGLRNSKNLI-------DVLKKLR--PADKPPYLVLNQVKTPKKPEI-SISDFCAPLGITP-SAIIPF 365 (427)
Q Consensus 297 AD~vviV~~p~~~slr~a~~ll-------~~l~~~~--~~~~~~~iVlNr~~~~~~~~i-~~~~~~~~lg~~~-~~~IP~ 365 (427)
T Consensus 257 Ad~vlIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~~d~~~~~~~~v~~~~r~~fg~~vl~~~i~~ 336 (387)
T TIGR03453 257 ATAVLITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTRYEPNDGPQAQMVAFMRSLFGEHVLTNPMLK 336 (387)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEH
T ss_conf 19408788871777999999999999999999971677676405776451789984699999999998506542362016
Q ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 799999988479618988899989999999999
Q gi|254780725|r 366 DGAVFGMSANSGKMIHEVDPKSAIANLLVDFSR 398 (427)
Q Consensus 366 D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~ 398 (427)
T Consensus 337 S-~ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e 368 (387)
T TIGR03453 337 S-TAISDAGLTKQTLYEVERSQFTRSTYDRAME 368 (387)
T ss_pred H-HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 7-9998637637935987746589899999999